Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq866 125 5e-24 seq766 122 6e-23 >seq866 Length=7889 Score = 125 bits (138), Expect = 5e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| ||||||||||| || | | ||| |||| || |||||||| ||||| || Sbjct 2836 CTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 2777 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||||| |||||||| || | || | ||| ||||| || |||||| ||| || || Sbjct 2776 GATCAAGCGCTGCTGGTCGGGGGGGATACCCTCCTTATCTTGGATCTTCGACTT-AACGT 2718 Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | |||||||| | ||||| ||||| | ||| || ||||| || || || ||||||| Sbjct 2717 TGTCAATGGTGTCTGAAGATTCAACCTCGAGCGTGATTGTCTTGCCAGTAAGAGTCTTCA 2658 Query 44325 CGAAGATTTGCAT 44337 ||||||| ||||| Sbjct 2657 CGAAGATCTGCAT 2645 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| ||||| ||||||||||| ||| || ||| | || ||| Sbjct 3081 ACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCC 3022 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || ||||| | ||||||||| || | ||| | ||| ||||| ||| Sbjct 3021 AACTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGA 2962 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || ||||| | || || ||||||| ||||||||||| Sbjct 2961 ATCTTAGACTTCACGTTGTCAATCGTGTCTGATGACTCGACCTCCAAGGTAATCGTCTTG 2902 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||||||||||| ||||| Sbjct 2901 CCAGTCAACGTCTTCACGAAGATCTGCAT 2873 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| |||||| |||||| || |||||||| |||| ||| ||| | || || Sbjct 2625 ACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 2566 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || |||||||||||||||||||| || | ||| | || ||||| ||| Sbjct 2565 AGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 2506 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | || || ||||| | || || ||||| Sbjct 2505 ATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 2446 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || ||||||||||| |||| Sbjct 2445 CCGGTGAGGGTCTTGACGA 2427 Score = 82.4 bits (90), Expect = 5e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 2339 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 2280 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || || || || || | |||||||||||| | || | || ||||| || Sbjct 2279 AGCTGTTTGCCAGCGAAAATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTCTTGA 2220 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| || || ||||| | || || ||||| Sbjct 2219 ATCTTGGACTTGACGTTGTCGATGGTATCGGATGACTCGACCTCGAGAGTGATGGTCTTG 2160 Query 44309 CCCGT 44313 || || Sbjct 2159 CCGGT 2155 >seq766 Length=50960 Score = 122 bits (134), Expect = 6e-23 Identities = 138/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| |||| || |||||||| || || |||| Sbjct 295 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 236 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 235 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 176 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||| || ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 175 --CGATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 118 Query 44326 GAA 44328 ||| Sbjct 117 GAA 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982419350323