Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq866 138 3e-27 >seq866 Length=7889 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| ||||| || || || || ||||| |||||||| ||| |||||| Sbjct 2648 CAGATCTTCGTGAAGACTCTTACTGGCAAGACAATCACGCTCGAGGTTGAATCTTCAGAC 2707 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| || || || || || ||||| || |||||||| Sbjct 2708 ACCATTGACAACGTTAAGTCGAAGATCCAAGATAAGGAGGGTATCCCCCCCGACCAGCAG 2767 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||||||||| ||||| || || || | || | | || || ||| || Sbjct 2768 CGCTTGATCTTCGCCGGAAAGCAGCTTGAGGACGGTCGCACGTTGTCGGACTACAACATC 2827 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||||||||| Sbjct 2828 CAGAAGGAGTCTACCCTGCATCTTGT 2853 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || ||||| ||| | ||||| || |||||| Sbjct 2876 CAGATCTTCGTGAAGACGTTGACTGGCAAGACGATTACCTTGGAGGTCGAGTCATCAGAC 2935 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||||||||| || || || |||||||| |||||||| Sbjct 2936 ACGATTGACAACGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAGCAG 2995 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| ||||| ||| | |||||||| | || || ||| || ||| || Sbjct 2996 CGTCTTATCTTCGCTGGAAAGCAGTTGGAAGATGGTCGCACCCTGAGCGACTACAACATC 3055 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 3056 CAGAAGGAATCCACCCTTCATCTCGT 3081 Score = 116 bits (128), Expect = 9e-21 Identities = 147/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || ||||| || || || |||||||| ||||| || || || ||||||| Sbjct 2427 TCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCTGATACCATCG 2486 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| |||||||||||||| || || || ||||| |||||||| || | | Sbjct 2487 ACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTTTGA 2546 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || || || || ||||| | || || |||| || ||| | || || | Sbjct 2547 TCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAGG 2606 Query 178111 AATCAACACTGCATCTTGTTT 178131 | || || || || |||| || Sbjct 2607 AGTCCACGCTCCA-CTTGGTT 2626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203703145915886