Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20godetiae_20[genbank_20GCA_5F001663355.1_202016-06- 15] 1,819 sequences; 35,034,269 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq766 141 9e-29 seq866 120 3e-22 >seq766 Length=50960 Score = 141 bits (156), Expect = 9e-29 Identities = 143/184 (78%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||| | Sbjct 295 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGA 236 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| |||||| ||||| | ||| | || |||||||||| ||| || ||| || | Sbjct 235 TCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 176 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||| ||||| | || || || ||||||||||| ||||| || Sbjct 175 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCAC 118 Query 41851 GAAA 41854 |||| Sbjct 117 GAAA 114 >seq866 Length=7889 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || |||||| ||||||||||||||| ||||||||| Sbjct 2643 CCACCGCGAAGACGGAGAACCAAGTGGAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 2584 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || |||||||| || || |||| ||||| ||||| | ||| Sbjct 2583 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 2524 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || | | ||| | | | || || ||||| || Sbjct 2523 ATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCGAC 2465 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || || || ||||| |||| Sbjct 2464 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGA 2427 Score = 102 bits (112), Expect = 8e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||||||||||||||| |||| || ||||| ||||| ||||| Sbjct 2322 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGCTGTTTGCCAGCGAA 2263 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || || ||||| || || | ||||| || ||||||||| Sbjct 2262 AATGAGACGCTGCTGATCGGGGGGAATGCCCTCCTTGTC 2224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462293488362800