Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq90 131 4e-25 >seq90 Length=51520 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTT 230469 ||| |||||||| | || || |||| ||| ||| | ||||||||| | || Sbjct 5161 GAACAGGAGTTCCTGACAGAGGCCCTTCCTTGTGCCCTGCTCGGCATGAACTCCAGCCTG 5102 Query 230470 ATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAA 230529 ||| |||||||| || ||||| ||||||||| | || ||||| ||||| |||| || Sbjct 5101 ATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCCCTTGGCAACGACAAG 5042 Query 230530 GTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACC 230589 || ||||| ||| |||||||||| || |||||| ||| || || || |||||| Sbjct 5041 GTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGAAAGACC 4982 Query 230590 AACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||||||| || |||||||| ||||| || | | ||||||| ||||| Sbjct 4981 AACTTCTTTGAGAAGCGTGTTGCCGACTACCAAAAGGCTGGTGTCATGAA 4932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057709406256650