Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 138 1e-27
seq90 87.8 2e-12
>seq1012
Length=16087
Score = 138 bits (152), Expect = 1e-27
Identities = 452/700 (65%), Gaps = 12/700 (2%)
Strand=Plus/Minus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
|||||||| || | || ||||| | | ||| ||||||| | || ||||| |||||
Sbjct 942 CCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATG 883
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
|||||||| || ||||||||||| | || || || | || | ||||| || ||
Sbjct 882 AAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCA 823
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160
||||| |||||| | ||| | | | |||| ||||| || || | ||| ||
Sbjct 822 TGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATA 763
Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220
| | | | || || || ||||| || || || || | ||| | ||| |||||||| |
Sbjct 762 GCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAG 703
Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280
|| | | ||| |||| | ||| || || | ||| ||||| || | || || ||
Sbjct 702 ACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 643
Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338
| || || || | |||| ||||| || || || |||||||| ||||| | |
Sbjct 642 GTAGCGCGGATGCGGTGGACATTG--AGACCAATGCCACCGGCCATTTTGGAGATCATAG 585
Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398
|||| || | || || ||||| ||||| ||| || ||| |||| | | || |
Sbjct 584 CGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGA 525
Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458
| || |||| || || || || || || || | |||||||| ||||| |
Sbjct 524 AGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAG 465
Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCAT 54514
|||| | || || | || ||||| || ||||| | || | || ||
Sbjct 464 TAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCC 405
Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574
|||| || || ||||||||||| | ||||||||||||||| || | |||||| |
Sbjct 404 AGATG----CCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCG 349
Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634
| | ||||| | ||| ||| | ||||| || || || || || || | || |||
Sbjct 348 TCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGATAGTTGAAG 289
Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTAT 54674
|| || ||||| | || | |||| || | |||||||
Sbjct 288 TCGCGGTCGTAGACGATGGCAGAGTCAAGCTCCTCCTTAT 249
>seq90
Length=51520
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/209 (69%), Gaps = 3/209 (1%)
Strand=Plus/Plus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| ||||| ||| ||| ||||||||||| | | || | || ||||| || || ||
Sbjct 5238 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGA 5297
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|||||||| || |||||||| || ||||| || || || ||||| | ||| ||||||
Sbjct 5298 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAA 5357
Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT---GT 24311
|| || || || || || || |||| || | | | | || | ||||
Sbjct 5358 ATACCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGAGGACTTCTCATCGCTA 5417
Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTT 24340
|||||||| ||||||| |||||||||||
Sbjct 5418 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 5446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593658851048400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |