Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1012 138 1e-27 seq90 87.8 2e-12 >seq1012 Length=16087 Score = 138 bits (152), Expect = 1e-27 Identities = 452/700 (65%), Gaps = 12/700 (2%) Strand=Plus/Minus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 |||||||| || | || ||||| | | ||| ||||||| | || ||||| ||||| Sbjct 942 CCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATG 883 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 |||||||| || ||||||||||| | || || || | || | ||||| || || Sbjct 882 AAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCA 823 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 ||||| |||||| | ||| | | | |||| ||||| || || | ||| || Sbjct 822 TGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATA 763 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | | || || || ||||| || || || || | ||| | ||| |||||||| | Sbjct 762 GCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAG 703 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| |||| | ||| || || | ||| ||||| || | || || || Sbjct 702 ACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 643 Query 54281 CTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | || || || | |||| ||||| || || || |||||||| ||||| | | Sbjct 642 GTAGCGCGGATGCGGTGGACATTG--AGACCAATGCCACCGGCCATTTTGGAGATCATAG 585 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| || | || || ||||| ||||| ||| || ||| |||| | | || | Sbjct 584 CGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGA 525 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | || |||| || || || || || || || | |||||||| ||||| | Sbjct 524 AGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAG 465 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCAT 54514 |||| | || || | || ||||| || ||||| | || | || || Sbjct 464 TAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCC 405 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 |||| || || ||||||||||| | ||||||||||||||| || | |||||| | Sbjct 404 AGATG----CCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCG 349 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 | | ||||| | ||| ||| | ||||| || || || || || || | || ||| Sbjct 348 TCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGATAGTTGAAG 289 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTAT 54674 || || ||||| | || | |||| || | ||||||| Sbjct 288 TCGCGGTCGTAGACGATGGCAGAGTCAAGCTCCTCCTTAT 249 >seq90 Length=51520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| ||| ||| ||||||||||| | | || | || ||||| || || || Sbjct 5238 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGA 5297 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || |||||||| || ||||| || || || ||||| | ||| |||||| Sbjct 5298 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAA 5357 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT---GT 24311 || || || || || || || |||| || | | | | || | |||| Sbjct 5358 ATACCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGAGGACTTCTCATCGCTA 5417 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 |||||||| ||||||| ||||||||||| Sbjct 5418 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 5446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593658851048400