Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq162 176 5e-39 >seq162 Length=42721 Score = 176 bits (194), Expect = 5e-39 Identities = 362/540 (67%), Gaps = 54/540 (10%) Strand=Plus/Minus Query 145681 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCC 145740 || |||| || ||||||| | ||||||||| || || |||| |||||| | | | Sbjct 18369 TTGAGGGCATCAACGTGGTCGGCGTAGACGTGTGCATCGCCCATGACGTGAGTCAGGCTG 18310 Query 145741 CCGGGCTCGAGGCC-CGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTAT 145799 ||||| ||||| | | || | |||| | ||||| |||||||| | |||||| || || Sbjct 18309 CCGGGGACGAGGTCGCATGCGC-GGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGAT 18251 Query 145800 GTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAG--- 145856 |||||| ||||| || || |||||||| | || |||||||||||||| ||| || Sbjct 18250 GTTGAAAGGCACTCCGAGGCCCATGTCGCAGGACCGCTGGTACAGCTGACAGTGCAGATG 18191 Query 145857 ------------CTCCCCGCC---------------CGCC------------ACGTAGAA 145877 ||||||| | |||| |||||||| Sbjct 18190 GCCCTTGGGCTTCTCCCCGTCGGCGGGTGCGCTGCGCGCCCGCGGGTAGGAGACGTAGAA 18131 Query 145878 CTG-GCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGG 145936 ||| ||| | | |||||| || ||||||||||| || ||||| |||||||| | Sbjct 18130 CTGCGCAAAC-ATGTGGCATGGTGGCAGGGCCATCTTCTTTAGATCCGCGGGGTTCCACG 18072 Query 145937 CGGTGAGGACGAGCCTCCTGCTCTCG---GGGTTCCTCTTGATCTCCCCTATCAGGTCCC 145993 || |||||| || | | || ||| ||||| |||||| | || | || Sbjct 18071 CGCTGAGGAGGA---TGCGGCGGTCGTACGGGTTTGTCTTGAGTTTGTGGATAACCTCGG 18015 Query 145994 TGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGA 146053 || ||||| |||||||| ||| ||| || ||||||| ||| |||||| |||| || | Sbjct 18014 CAAGTTGGTCGACGCCCTGACCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCGCCAA 17955 Query 146054 AGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCC 146113 |||| | ||| |||||||| ||||| || || || || ||| || | |||| || | Sbjct 17954 AGTGTCGCCATTGGAACCCATAGACAGGGCCGAGATCGCCGACTTCTCGGTGCGAGAGGC 17895 Query 146114 CGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGC 146171 || | | | | ||||| || || || ||||| ||||||| ||||||||||| |||||| Sbjct 17894 CGACGCTGTCAAGGAACTCACGCGAGCCGTTACCGTCCCAAATCTTGACGCCCGCCTCGC 17835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590014436258200