Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq90 174 2e-38
seq1955 159 4e-34
seq460 123 3e-23
seq395 111 2e-19
>seq90
Length=51520
Score = 174 bits (192), Expect = 2e-38
Identities = 210/285 (74%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | || ||
Sbjct 5853 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGATTTG 5794
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAAG 116752
|| |||||| | ||||||| | | || |||| | ||| | |||||| |
Sbjct 5793 TCTAAGGACCTGCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 5734
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | || ||||| |||||||| ||||||||||||||| ||||| ||||||||||
Sbjct 5733 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 5674
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||| |||||| ||||||| || |||||||| ||||| |||||| |||
Sbjct 5673 TTCAGCGGCGAGGTTCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAGATCATGATG 5614
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| || | || ||| ||||| ||||| |||
Sbjct 5613 GAGAACATCCACTCCGAGACCTACTCGTTGCTCATTGACACCTAC 5569
Score = 152 bits (168), Expect = 5e-32
Identities = 310/455 (68%), Gaps = 4/455 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040
|||||||||| ||||| || ||||| || |||| | || |||||| | |||||
Sbjct 5445 AGAAGGCCGACTGGGCTCTCAAGTGGATTAGCGAT-GAGAAGTCCTCCTTCGCCCAGCGC 5387
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
||||| || ||||| ||||||||||| | ||||| ||| || ||| | || ||
Sbjct 5386 CTGGTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTATCTTC 5327
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| || || ||||||||||| ||||| ||| ||| ||||| ||||| |
Sbjct 5326 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAATGAGCTTATCTCTCGT 5267
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
|||||||||||||| |||||| ||||| | ||| | || | | | || ||
Sbjct 5266 GACGAGGGTCTGCACACCGACTTCGCCTGCCTCTTGTACTCTCACCTCAAGAACCGCCCC 5207
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| | | || ||| || | |||||| ||| || || ||| |||||
Sbjct 5206 AGCAAGCAGGTTATCCAGGACATTATTGTCGACGCTGTCCAGATTGAACAGGAGTTCCTG 5147
Query 117281 ACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
|| || || || || |||| ||||| || | || | | |||| ||| |||||
Sbjct 5146 ACAGAGGCCCTTCCTTGTGC-CCTGCTCGGCATGAACTCCAGCCTGATGAAGCAGTACAT 5088
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
||||||||||||||| | || || | | || | | || |||| |||||| | |
Sbjct 5087 TGAGTTCGTCGCCGACCGCCTCTTGGTTGCCCTTGGCAACGACAAGGTCTACAAGTCTTC 5028
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
|||||| | ||||| ||| | ||||||| |||
Sbjct 5027 CAACCCCTTTGACTTCATGGAGAACATCTCCCTGG 4993
>seq1955
Length=8910
Score = 159 bits (176), Expect = 4e-34
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||| || |||||| |||| || || | ||
Sbjct 3564 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 3623
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 3624 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 3683
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || || ||||| || |||| |||||||| ||||||||||
Sbjct 3684 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 3743
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920
|||||||||||| |||| || || || ||| ||||| || | || || |||
Sbjct 3744 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGTGGC 3794
>seq460
Length=27106
Score = 123 bits (136), Expect = 3e-23
Identities = 138/182 (76%), Gaps = 2/182 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| |||||||| |||| ||||| || | || | | | | |||| | |||
Sbjct 24185 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACG-TGAAG 24243
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| || | ||||| ||||| |||||| | || ||||| || || |||| ||| |||
Sbjct 24244 TCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCAGCGTCTTATCTTCGCTGGC 24303
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
|| ||||| || |||| ||||||||| |||||||||||||||||||||| |||| ||
Sbjct 24304 AAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTT 24363
Query 40891 CA 40892
||
Sbjct 24364 CA 24365
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || | || || || |||||||| |||| |||||| | ||
Sbjct 24391 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTCGAGGTCGAATCATCC 24450
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||| || || | ||||| |||||||| || | || ||
Sbjct 24451 GACACCATTGACAACG-TCAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCA 24509
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | || | ||| || || |||||||| || | ||||| | |||||||||
Sbjct 24510 GCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAA 24569
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||| ||||||||| | || || || || |||
Sbjct 24570 CATTCAGAAGGAGTCGACTCTCCACCTTGTG 24600
>seq395
Length=29552
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| || | |||| |
Sbjct 1006 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 1065
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| | |||||||| || |
Sbjct 1066 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 1125
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | || |||||| |||||||||||||||||||
Sbjct 1126 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAACATCCAGAAG 1185
Query 40879 G 40879
|
Sbjct 1186 G 1186
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515164747770800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |