Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1012 114 3e-20 seq9 96.9 7e-15 >seq1012 Length=16087 Score = 114 bits (126), Expect = 3e-20 Identities = 236/346 (68%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || |||||| |||||| ||||| || |||| |||||||| | || || | Sbjct 311 TTCAAGACCTTGGAGAGATCGTACCTCCTGAAGCTTGACGGCAAGATTGCCGAGAGACCT 370 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || ||||| || || |||||| | || |||| || Sbjct 371 CAGCACATGATCATGCGTGTCGCTGTGGGCATCTGGGGCGATGACGTTGAACGCGTCATC 430 Query 248953 GAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 || || |||| | ||| | | | | | | || || ||| | || ||||||||||| Sbjct 431 GAAACCTACAACCTGATGTCGAGCAAGTTCTTT-ACTCACGCCTCTCCTACGCTCTTCAA 489 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 |||||| ||| | ||||||| ||| ||||| ||| | | ||| | || ||||| Sbjct 490 CGCCGGCACCCCTCAGGCTCAGCTGTCCTCTTGCTTCCTTGTCGATATGAAGGAGGACTC 549 Query 249072 TGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTTCTAAATTCGCGGGCG 249130 | |||| || || || ||||| || || || | || | ||| || ||| | || || | Sbjct 550 TATCGAGGGTATCTACGACACCCTCAAGACCTGC-GCTATGATCTCCAAAATGGCCGGTG 608 Query 249131 GAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACAT 249176 | || |||||| ||| | |||||| || | || || ||||| Sbjct 609 GCATTGGTCTCAATGTCCACCGCATCCGCGCTACCGGCTCTTACAT 654 >seq9 Length=87542 Score = 96.9 bits (106), Expect = 7e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 |||||||| |||||| || | ||||| |||||||| || | ||||| || || ||| Sbjct 25765 TGTCCGCCCTTCAAGATCATCATCCTCGACGAGGCCGATTCGATGACACAGGATGCTCAG 25824 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 ||||||||| || || |||||||| | | | ||||| |||||||| | ||| Sbjct 25825 AGCGCCCTCCGTCGGACCATGGAGACATATAGCAAGATCACGCGATTTTGCCTAATCTGC 25884 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||||| || ||||| | || || ||| ||| ||| ||||||||| |||| Sbjct 25885 AACTACGTCACGCGCATCATTGATCCTCTTGCTAGTCGTTGCAGCAAGTTTCGCTTCA 25942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073650079221440