Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1955 136 3e-27 seq460 120 2e-22 >seq1955 Length=8910 Score = 136 bits (150), Expect = 3e-27 Identities = 161/217 (74%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| ||| ||| |||| || Sbjct 3772 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 3713 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| |||| ||||| |||||||| || | |||||||||||| Sbjct 3712 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 3653 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||| | ||| || |||||| Sbjct 3652 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTG 3593 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 ||||| || |||||||| ||||| |||||| |||||| Sbjct 3592 CCCGTGAGGGTCTTCACGAAGATCTGCATGATTGCCT 3556 >seq460 Length=27106 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| |||||||||||||||||| ||| |||| |||| |||| ||||| || Sbjct 24822 GTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAGCTG 24763 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || || | ||||| ||||| ||||| | ||||||||| || ||| || Sbjct 24762 CTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGAATCTT 24703 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||||| | | ||||| ||| ||||| | |||||||||||||| || Sbjct 24702 GGATTTAACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTCTTGCCGGT 24643 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||||||||| Sbjct 24642 CAAGGTCTTGACGAAGATTTGCAT 24619 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| || |||| | || ||||| || ||||||||||| Sbjct 24582 CTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAA 24523 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||| || |||||||| | |||||||||||| || || || || Sbjct 24522 AATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTGACGTT 24463 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || ||||| | || || ||||| || |||| ||||| || Sbjct 24462 GTCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTCTTTCCGGTCAAGGTCTTGAC 24403 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 24402 AAAGATCTGCAT 24391 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| || ||| |||| || Sbjct 24371 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 24312 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || ||||| || | ||||| || ||||| || | ||||||||||||| Sbjct 24311 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCC 24255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395034489352555