Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1012 412 3e-110 seq90 147 2e-30 seq460 129 5e-25 seq1955 111 1e-19 >seq1012 Length=16087 Score = 412 bits (456), Expect = 3e-110 Identities = 1203/1844 (65%), Gaps = 30/1844 (2%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 ||||| || || |||||||||||||||||||| | |||||| | || || || Sbjct 2094 GTGCGCAGGTAGTACATGCCCGTCTTCAGACCGAGCTTCCAACCAGCGAAGTGCATGCTG 2035 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | | || | ||||| | || | |||||| ||| ||||| Sbjct 2034 GTGATCTTGCCCATAGTTGGGTCCTTCATGTGGATGTTAAGCGACTGCGACTGGTCGATG 1975 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || || || ||||| ||||| | | | |||||| || |||||||| |||||| Sbjct 1974 AAGGCACCACGGTCGGCAGCCATCTGCACGACGGTACGCTGGGAGATTTCCCAAACGGTC 1915 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 ||||||||| ||| ||| || || ||| |||| | || ||||| | | Sbjct 1914 TTGTACAGTGCTTTGACCTCGGTAGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCG 1855 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 || || || || || | |||| ||||| || || || | || || | Sbjct 1854 GCAATAATACGGTTCTTCATAGCATCGGACCACAGGCCCATATCGACGAGGTCCTTCAAG 1795 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504 || | |||| || || ||||||||||| | | ||| ||||| || || || || || Sbjct 1794 AGCCAAGGGTTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAG 1735 Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| | || ||||| | |||||||| |||| ||||||| ||| || |||||||| Sbjct 1734 GTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATG 1675 Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCG 22622 ||||| | || || ||||| | | ||||||| |||| | | || ||||||| Sbjct 1674 GGCGCGACAAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATC- 1616 Query 22623 ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGC 22682 ||||||||| ||||| || ||| | ||||| |||||| ||||| || | | ||| Sbjct 1615 -CCAGTCCCAGAGATCCGAGGGCTTAACATT---CCACATGTCGTACTGGAGGATGCCCT 1560 Query 22683 GACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC 22742 || | ||| || |||||||| ||||| ||||| | | ||| | | ||| | Sbjct 1559 GAGAAACAGGGGAACCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACT-GCACC 1501 Query 22743 TCGCCTCCAACGCGC--CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC 22800 | | | | || ||| || || |||||||| || |||||||| | || || Sbjct 1500 GA-CATGGTAAGGGCAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGC 1442 Query 22801 GGCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCC 22860 || | || | ||||| || | || ||| || || || | ||||||||| || Sbjct 1441 TTCGGGGGACTCAAAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACC 1382 Query 22861 TATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACC 22916 | ||| || || |||| || || || |||| ||| | | || || Sbjct 1381 GAGACCAATGGGGCGGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGGACCGGGTAGT 1326 Query 22917 AATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNN 22976 || ||||| ||||||| | ||| | || | | || | Sbjct 1325 GGTTGACGTCGATAATTCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCT 1266 Query 22977 NNTCAAAGTCGTAAACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAA 23033 | |||||||| || ||| ||||| |||| || || | ||||| |||||| | Sbjct 1265 TCTGGAAGTCGTAGACACCCTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCA 1206 Query 23034 GATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTG- 23092 | || ||||| || ||||| || | ||| || | || || || || || ||| Sbjct 1205 GGTTACATACAGCGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGG 1146 Query 23093 --CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGT 23150 |||| || || |||| || |||||||||| || || ||| | |||||||| Sbjct 1145 AGCTACGG---ATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGT 1089 Query 23151 AGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCT 23210 |||||||| | || |||| |||||| ||| | ||||| || || ||| | | | Sbjct 1088 AGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTT 1029 Query 23211 GAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCA 23269 | || | | ||| || ||| ||| | ||||||||| | ||||| | || Sbjct 1028 GGGCCTTGATG-GTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGGTCTCG 970 Query 23270 AATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCAC 23329 || || | ||||| |||||||| || || || | | | || ||||||||| |||| Sbjct 969 AACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAG 910 Query 23330 ATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGT 23389 | || || || || | |||| || ||||| || ||||| |||||| ||| || Sbjct 909 TCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGG 850 Query 23390 TCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACG 23449 ||||||||||| |||||||| ||||| |||||| | |||||| ||||| || ||| Sbjct 849 TCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACG 790 Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || || ||||| ||||||||||||| ||||| || || || | ||| ||||| || || Sbjct 789 TCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCACCTTGG 730 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCG 23569 |||||||| || || ||||| ||| | || | ||||| || |||| |||||| || | Sbjct 729 TCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTA 670 Query 23570 CCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATG 23629 ||| ||| || | || || | || || | | ||| || | || ||| ||| Sbjct 669 CCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATG 610 Query 23630 CCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATG 23689 || ||| || ||| || ||||| ||||| || || ||||||||||| |||||||| Sbjct 609 CCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATA 550 Query 23690 CTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCC 23749 |||||| || | |||| | ||| || || |||| || || | || || |||| Sbjct 549 GAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCG 490 Query 23750 GAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCG 23809 ||| || || || |||||| |||||| | ||||||| || ||||| || ||| Sbjct 489 TTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCG 430 Query 23810 ATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGA 23869 ||| || |||| ||| || || || || | ||||| ||||| ||||||| ||| Sbjct 429 ATGACGCGTTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGA 370 Query 23870 GGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAAT 23929 ||||||||| | | ||||| || || | || || || | | || || || || Sbjct 369 GGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAG 310 Query 23930 CCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || || | |||||| ||||| || |||| || ||||| || Sbjct 309 CCGAAGTATTGATAGTTGAAGTCGCGGTCGTAGACGATGGCAGA 266 >seq90 Length=51520 Score = 147 bits (162), Expect = 2e-30 Identities = 268/389 (69%), Gaps = 10/389 (3%) Strand=Plus/Minus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| || ||| | |||| ||||| | | | | || | |||||| || | Sbjct 5446 AAGAAGGCCGACTGGGCTCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCGC 5387 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || | || ||||| |||||||| ||||| ||||| ||| |||||| | || || Sbjct 5386 CTGGTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTATCTTC 5327 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||| || || || |||||||| ||||| || ||| ||| | || || || Sbjct 5326 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAATGAGCTTATCTCTCGT 5267 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 ||||||||||| || || || || || ||||| ||||||||||| |||| ||||| Sbjct 5266 GACGAGGGTCTGCACACCGACTTCGCCTGCCTCTTGTACTCTCAC---CTCAA-GAACCG 5211 Query 58155 ACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGT 58209 | | | | || ||| ||||||||| ||| || ||| ||| ||| | |||| Sbjct 5210 CCCCAGCA-AGCAGGTTATCCAGGACATTATTGTCGACGCTGTCCAGATTGAACAGGAGT 5152 Query 58210 TTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGT 58269 | | || || ||||| || ||| ||||||| |||||| ||||| ||| Sbjct 5151 TCCTGACAGAGGCCCTTCCTTGTGCCCTGCTCGGCATGAACTCCAGCCTGATGAAGCAGT 5092 Query 58270 ACATTGAGTTTGTTGCCGACAGACTTTTG 58298 |||||||||| || |||||| | || ||| Sbjct 5091 ACATTGAGTTCGTCGCCGACCGCCTCTTG 5063 >seq460 Length=27106 Score = 129 bits (142), Expect = 5e-25 Identities = 180/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| ||||| ||||| || |||| ||||| | || Sbjct 24619 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACGATTACGCTCGAGGTTGAGTCATCG 24678 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| | || | ||| | | | ||||| || | || || ||||| Sbjct 24679 GACACAATCGACAACGTTAAATCCAAGATTCAAG-ATAAGGAGGGTATCCCTCCTGACCA 24737 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || ||| |||| ||| | || |||||||||| || Sbjct 24738 GCAGCGTCTCATTTTTGCTGGAAAGCAGCTGGAGGACGGTCGCACCCTGAGCGATTACAA 24797 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AG-AAGCGGT 31429 |||||| || || ||||| ||||| || || || | ||| | |||||| || ||||| | Sbjct 24798 CATTCAGAAGGAGTCGACGCTTCACCTCGTCCTCCGTCTGCGTGGCGGTCAGTAAGCGAT 24857 Query 31430 GACGTCG 31436 | | ||| Sbjct 24858 GGCTTCG 24864 >seq1955 Length=8910 Score = 111 bits (122), Expect = 1e-19 Identities = 171/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| |||| || || Sbjct 3559 CAATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGT 3618 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 3619 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 3678 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| || || ||| | || ||| || || ||| | Sbjct 3679 ACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACT 3738 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423 | ||||| || || || || || || || ||||| || | ||| | || ||| ||| Sbjct 3739 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGTGGCAAGA 3798 Query 31424 AGCG 31427 |||| Sbjct 3799 AGCG 3802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445719288063600