Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq90 129 1e-24 seq1012 84.2 4e-11 >seq90 Length=51520 Score = 129 bits (142), Expect = 1e-24 Identities = 296/444 (67%), Gaps = 15/444 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||| || ||||| || || || || ||||| ||||| || || || || || |||||| Sbjct 5383 GTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTATCTTCTGG 5324 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||| ||||| |||| |||||||||| | || ||| | ||| Sbjct 5323 CTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAATGAGCTTATCTCTCGTGAC 5264 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATA----C 102093 || ||||| || |||||| || ||| | ||| | | | | | | Sbjct 5263 GAGGGTCTGCACACCGACTTCGCCTGCCTCTTGT------ACTCTCACCTCAAGAACCGC 5210 Query 102094 CCCATCAAGAGAAAGG--ATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 |||| |||| ||| || | || ||| | || || |||| |||||||| || Sbjct 5209 CCCAGCAAGC---AGGTTATCCAGGACATTATTGTCGACGCTGTCCAGATTGAACAGGAG 5153 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 || || |||| |||| ||| | | | || ||||||| || |||||| ||| Sbjct 5152 TTCCTGACAGAGGCCCTTCCTTGTGCCCTGCTCGGCATGAACTCCAGCCTGATGAAGCAG 5093 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 |||||||| || || || || || ||||||| | || || ||| ||| || Sbjct 5092 TACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCCCTTGGCAACGACAAGGTCTACAAG 5033 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 | |||||||||| |||||||| || || ||||| | ||||||||||| ||| Sbjct 5032 TCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGAAAGACCAACTTCTTT 4973 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 || ||| | || ||||| || ||| Sbjct 4972 GAGAAGCGTGTTGCCGACTACCAA 4949 >seq1012 Length=16087 Score = 84.2 bits (92), Expect = 4e-11 Identities = 109/149 (73%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || |||||||||| | || ||||| || || | | ||||| ||| ||||| || Sbjct 994 CTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACA 935 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGC--CTTCACTCTCTCCATGAAGAGA 94524 ||||| ||||||||| || | ||| | ||| | || |||||||| |||||||||| Sbjct 934 CTCGTTGGGGCACATGAGAGTCCAGTC--TCCGTTCTTCTCCACTCTCTTCATGAAGAGA 877 Query 94525 TCAGATACCCAGATAGCTGGGAAAAGATC 94553 || | | ||| | ||| ||||||| || Sbjct 876 TCGGGGATCCAAAGAGCGAGGAAAAGGTC 848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989476798674525