Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1012 132 6e-26 >seq1012 Length=16087 Score = 132 bits (146), Expect = 6e-26 Identities = 626/981 (64%), Gaps = 34/981 (3%) Strand=Plus/Minus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 63007 || ||||| ||||| || || ||||||| || | ||| |||| || ||||||||||| Sbjct 1212 GAGGCCAGGTTACATACAGCGACCTCATCAGGCGC-GCAGTATTCGATGATCTCAGTGCA 1154 Query 63008 AAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 63064 || || |||| |||||| || | || | || || ||||| ||| || Sbjct 1153 GAGGTTGGAGCTACG---GATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGC 1097 Query 63065 ATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 |||||| || || ||||| || | || || || |||||| || | ||| || | ||| Sbjct 1096 ATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCA 1037 Query 63125 GACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGAGT 63178 || | | ||||| || | ||| | |||| | | | ||||| | || Sbjct 1036 GAGCTTTTGGGCCTTGATGGTC---TTGCGAC-CCTTGCCCATCTGCTCGTACTTCTCGT 981 Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CTAGGACATTCATCCGGAC 63237 | | || |||||||| || ||| | || | ||| | |||||| || | || | Sbjct 980 ACAGGGTC--TCGAACTCCTC-CCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGC 924 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 |||| | | ||| ||||||| | || ||||| ||||| |||||||| || ||||||| Sbjct 923 ACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAA 864 Query 63298 GAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 |||| | || || || | | | ||||| || || ||||| |||||| | Sbjct 863 GAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCA 804 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 ||| | | | |||| ||||| || || | ||| || || | | | || || || | Sbjct 803 AGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCT 744 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 |||| || || || || | ||| | ||| |||||||| | || | | ||| |||| | Sbjct 743 TGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGA 684 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACT 63535 |||||| || |||| ||||| || | || || || | || || || | Sbjct 683 CACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGA 624 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 |||| ||||| || || || |||||||| ||||| | ||||| || | ||||| Sbjct 623 CATTG--AGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTC 566 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 ||||| || || || || || |||| | | || || || |||| || Sbjct 565 GTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGC 506 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 ||| || || || || || | |||||||| ||||| ||||| | || || | Sbjct 505 CTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACAT 446 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGA 63771 || ||||| || || || | || | || || |||| || || |||| Sbjct 445 CAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAGATG----CCCACAGCGA 390 Query 63772 CACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGG 63831 ||||||| | ||||||||||||||| || |||| ||| || | |||| | ||| | Sbjct 389 CACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACG 330 Query 63832 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63891 || | ||||| || || || || || || | || ||||| || ||||| | || Sbjct 329 ATCTCTCCAAGGTCTTGAAGCCGAAGTATTGATAGTTGAAGTCGCGGTCGTAGACGATGG 270 Query 63892 CCGAATTGAGCTTATCCTTAT 63912 | || | |||| ||||||| Sbjct 269 CAGAGTCAAGCTCCTCCTTAT 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629751036152400