Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq162 123 2e-23 >seq162 Length=42721 Score = 123 bits (136), Expect = 2e-23 Identities = 351/533 (66%), Gaps = 60/533 (11%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 |||| ||||||||||| | ||| ||||| || || |||| | ||| | || || || Sbjct 18366 AGGGCATCAACGTGGTCGGCGTAGACGTGTGCATCGCCCATGACGTG-AGTCAGGCTGCC 18308 Query 20985 GGGGTC-AGGCC-CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGT 21042 |||| | ||| | | || || | || |||| | |||||| || |||||||| ||||||| Sbjct 18307 GGGGACGAGGTCGCATG-CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGT 18249 Query 21043 TAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG----- 21097 | || || || ||||||||||||||| ||||| |||||||||||| ||| ||| Sbjct 18248 TGAAAGGCACTCCGAGGCCCATGTCGCAGGACCGCTGGTACAGCTGACAGTGCAGATGGC 18189 Query 21098 ----------CTCCCC---------------CCGAGCC------------ACGTAAAACT 21120 |||||| || ||| ||||| |||| Sbjct 18188 CCTTGGGCTTCTCCCCGTCGGCGGGTGCGCTGCGCGCCCGCGGGTAGGAGACGTAGAACT 18129 Query 21121 GACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179 | | |||| | ||| || || || || |||||| | || |||||||||||||||||| Sbjct 18128 G-CGCAAACATGTGGCATGGTGGCAGGGCCATCTTCTTTAGATCCGCGGGGTTCCACGCG 18070 Query 21180 CACATAACGATGCGCCGATCGT--GGGGCCGCCT---GTTAATTAGATCCACCACGTAAC 21234 | | | |||||| || |||| ||| | || ||| | ||| ||| || | Sbjct 18069 CTGAGGAGGATGCGGCGGTCGTACGGGTTTGTCTTGAGTT-TGTGGAT-AACCTCGGCA- 18013 Query 21235 GCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAA 21294 || ||||| || ||||||||| ||||| | | ||| | |||||| || |||| Sbjct 18012 --AGTTGGTCGACGCCCTGACCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCGCCAA 17955 Query 21295 AATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGC 21354 | |||| ||| |||||||| || || || || |||||||| | |||| | | || Sbjct 17954 AGTGTCGCCATTGGAACCCATAGACAGGGCCGAGATCGCCGACTTCTCGGTGCGAG-AGG 17896 Query 21355 CCTGCGCCGCCAA-AAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCC 21406 || ||| | ||| || | || || |||| |||||||||| || ||||| Sbjct 17895 CCGACGCTGTCAAGGAACTCACGCGAGCCGTTACCGTCCCAAATCTTGACGCC 17843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427731919688400