Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq162 123 2e-23
>seq162
Length=42721
Score = 123 bits (136), Expect = 2e-23
Identities = 351/533 (66%), Gaps = 60/533 (11%)
Strand=Plus/Minus
Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984
|||| ||||||||||| | ||| ||||| || || |||| | ||| | || || ||
Sbjct 18366 AGGGCATCAACGTGGTCGGCGTAGACGTGTGCATCGCCCATGACGTG-AGTCAGGCTGCC 18308
Query 20985 GGGGTC-AGGCC-CGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGT 21042
|||| | ||| | | || || | || |||| | |||||| || |||||||| |||||||
Sbjct 18307 GGGGACGAGGTCGCATG-CGCGGGCAATCATGTGCGTCAGCAGCGCGTAGCTCGCGATGT 18249
Query 21043 TAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAG----- 21097
| || || || ||||||||||||||| ||||| |||||||||||| ||| |||
Sbjct 18248 TGAAAGGCACTCCGAGGCCCATGTCGCAGGACCGCTGGTACAGCTGACAGTGCAGATGGC 18189
Query 21098 ----------CTCCCC---------------CCGAGCC------------ACGTAAAACT 21120
|||||| || ||| ||||| ||||
Sbjct 18188 CCTTGGGCTTCTCCCCGTCGGCGGGTGCGCTGCGCGCCCGCGGGTAGGAGACGTAGAACT 18129
Query 21121 GACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCG 21179
| | |||| | ||| || || || || |||||| | || ||||||||||||||||||
Sbjct 18128 G-CGCAAACATGTGGCATGGTGGCAGGGCCATCTTCTTTAGATCCGCGGGGTTCCACGCG 18070
Query 21180 CACATAACGATGCGCCGATCGT--GGGGCCGCCT---GTTAATTAGATCCACCACGTAAC 21234
| | | |||||| || |||| ||| | || ||| | ||| ||| || |
Sbjct 18069 CTGAGGAGGATGCGGCGGTCGTACGGGTTTGTCTTGAGTT-TGTGGAT-AACCTCGGCA- 18013
Query 21235 GCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAA 21294
|| ||||| || ||||||||| ||||| | | ||| | |||||| || ||||
Sbjct 18012 --AGTTGGTCGACGCCCTGACCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCGCCAA 17955
Query 21295 AATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGC 21354
| |||| ||| |||||||| || || || || |||||||| | |||| | | ||
Sbjct 17954 AGTGTCGCCATTGGAACCCATAGACAGGGCCGAGATCGCCGACTTCTCGGTGCGAG-AGG 17896
Query 21355 CCTGCGCCGCCAA-AAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCC 21406
|| ||| | ||| || | || || |||| |||||||||| || |||||
Sbjct 17895 CCGACGCTGTCAAGGAACTCACGCGAGCCGTTACCGTCCCAAATCTTGACGCC 17843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427731919688400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |