Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1012 159 5e-34 seq90 100 4e-16 >seq1012 Length=16087 Score = 159 bits (176), Expect = 5e-34 Identities = 1197/1900 (63%), Gaps = 57/1900 (3%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||| || ||||| |||| || | | ||| || || |||||||| ||||| || ||| Sbjct 2124 GTGAACTGGATGGGCGCGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTCAGA 2065 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACTCGGATCTGCTAT 78836 ||||| |||| || ||| ||||| || || | ||| ||| | || || | || Sbjct 2064 CCGAGCTTCCAACCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGTTGGGTCCTTC-AT 2006 Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896 ||||| || | || || || ||||||||||| || | ||| |||||||| | | Sbjct 2005 GTGGATGTTAAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCAC 1946 Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 78956 || || || | |||||||||| || || || | | || | || |||| Sbjct 1945 GACGGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAGTGCTTTGACCTCGGTAGGAAT 1886 Query 78957 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 ||| | | |||||||| || || || || ||||| | ||||| || | || Sbjct 1885 GTTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATAATACGGTTCTTCATAGCATCGGA 1826 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| | | ||| | | | | ||| || || ||||| ||||| || || Sbjct 1825 CCACAGGCCCATATCGACGAGGTCCTTCAAGAGCCAAGGGTTGACTACCTGAAACTCGCC 1766 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 || | || | || || ||||| ||| || || || | | ||||| || || Sbjct 1765 AGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAAGCACTCATTGTTGCC 1706 Query 79134 CAAAATTTGAGCAGTTGATGCC-GTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 79192 ||| || |||| || || || | || ||||| || || || | | | || | | || Sbjct 1705 CAAGATCTGAG-AGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAGAGAGTTGCGGACAC 1647 Query 79193 CGTA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACA 79251 ||| || | |||| | || || |||| ||||| ||||| ||||| || || |||| Sbjct 1646 CGTGCTGCT-TGATCTGCTCCTTCAGAGCATCCCAGTCCCAGAGATCCGAGGGCTTAACA 1588 Query 79252 TTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAA 79311 ||||| | || || || || || || | | | | || || ||| || || || Sbjct 1587 TTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTCTCGTAG 1528 Query 79312 GGTCCTTCCTTTTCGGCTAATT-CACA-ACTCGCCTCTAATG-CTCCGTAATAAATGGTT 79368 || || |||| ||| || | ||| || | ||| | | ||| || || || Sbjct 1527 GGACCCTCCTCCCTGGCCAACTGCACCGACATGG---TAAGGGCAGCGTGGTAGATTGTC 1471 Query 79369 TCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGA 79428 ||||| |||||||| ||||| || | ||||| || ||||| || | |||| Sbjct 1470 TCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGGC-ATGCGGAGAGC 1412 Query 79429 ATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 79487 | || || || || | || |||||||| | ||| || || | || | | | || | Sbjct 1411 CAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTT-GC 1353 Query 79488 AATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGA 79546 || | ||| || | | || || | || | || |||||| | ||||| || | | Sbjct 1352 TGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTCTGTTGAGGTTACGAA 1293 Query 79547 CTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC----AAATCGTCCATCTATT--A 79600 | | || | | || || | || || | || || | | | || | || | | Sbjct 1292 CAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGACACCCTCGTTGTAGTCAA 1233 Query 79601 CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA- 79659 | || || || |||| || ||||| ||||| || || ||||||| || | ||| Sbjct 1232 CGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTCATCAGGCGC-GCAG 1174 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTA---CTACACTTAATGGTTCCTAAATTTTGTTGA 79716 |||| || || |||||||||||||| |||| || || || | || | || Sbjct 1173 TATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATA---GTACCCAGGTTCTTCTGG 1117 Query 79717 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGA 79776 || ||||| ||| |||||||| || || ||||| || | || || || ||||| Sbjct 1116 TTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGA 1057 Query 79777 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTC- 79835 | || | ||| || | ||||| | | ||||| || | |||| | ||| | Sbjct 1056 GCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGT---CTTGCGACCCTTGCCC 1000 Query 79836 -TCTT-TCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAACA-TCGTCTAAT 79890 ||| ||||| || | ||| | || |||||||| || ||| | || ||| | | Sbjct 999 ATCTGCTCGTACTTCTCGTACAGGGTC--TCGAACTCCTC-CCCGTAGCAGTCGGCAAGA 943 Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 |||||||| |||| || ||||| | | ||| ||||| | | || |||| ||||| Sbjct 942 CCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATG 883 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 |||||||| || ||||||||||| | || || || | || | |||||| || || Sbjct 882 AAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCA 823 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 ||||| |||||| | ||| | | | |||| ||||| || || | ||| || Sbjct 822 TGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATA 763 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | | || || || ||||| || || || || | ||| | ||| |||||||| | Sbjct 762 GCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAG 703 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | | ||| |||| | ||| || || ||||| ||||| || | || || || Sbjct 702 ACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCG 643 Query 80191 CTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 | || || || | |||| ||||| || || || |||||||| ||||| | | Sbjct 642 GTAGCGCGGATGCGGTGGACATTG--AGACCAATGCCACCGGCCATTTTGGAGATCATAG 585 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 |||| || | || || ||||| ||||| || || || |||| | | || | Sbjct 584 CGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGA 525 Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368 | || |||| || || || || || || || | |||||||| ||||| | Sbjct 524 AGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAG 465 Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCAT 80424 |||| | || |||| || ||||| || || || | ||| | || || Sbjct 464 TAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCC 405 Query 80425 TGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTA 80484 |||| || || ||||||||||| | ||||||||||||||| || | |||||| Sbjct 404 AGATG----CCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCG 349 Query 80485 TTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 80544 | | |||| | ||| ||| | ||||| || || || || || || | || ||| Sbjct 348 TCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGATAGTTGAAG 289 Query 80545 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 80584 || || ||||| | || | |||| || | ||||||| Sbjct 288 TCGCGGTCGTAGACGATGGCAGAGTCAAGCTCCTCCTTAT 249 >seq90 Length=51520 Score = 100 bits (110), Expect = 4e-16 Identities = 148/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||| ||||||||||||||| | | || || || ||||| || || || Sbjct 5238 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGA 5297 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || |||||||| || ||||| || || || ||||| | ||| ||||| Sbjct 5298 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAA 5357 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT---GT 50136 || || || || || || || ||||| || | || | | || | |||| Sbjct 5358 ATACCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGAGGACTTCTCATCGCTA 5417 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 |||||||| ||||||| ||||||||||| Sbjct 5418 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 5446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718192887966200