Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1012 140 4e-28 seq90 91.5 2e-13 >seq1012 Length=16087 Score = 140 bits (154), Expect = 4e-28 Identities = 609/950 (64%), Gaps = 30/950 (3%) Strand=Plus/Minus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 || ||||| ||||| || || ||||||| || || |||| || || |||||||| Sbjct 1212 GAGGCCAGGTTACATACAGCGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAG 1153 Query 71764 AGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 71820 || || |||| ||| || || | || | || || ||||| ||| ||| Sbjct 1152 AGGTTGGAGCTACG---GATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCA 1096 Query 71821 TCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 71880 ||||| || || || || || | || || || |||||| || | ||| || | |||| Sbjct 1095 TCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAG 1036 Query 71881 ACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTC--TCTT-TCGTA-TTGT-GTAT 71935 | | | ||||| || | |||| | ||| | ||| ||||| || | ||| Sbjct 1035 AGCTTTTGGGCCTTGATGGT---CTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTAC 979 Query 71936 ATAATCGTTCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACAC 71994 | || |||||||| || ||| |||| | | | | |||||||| || || || ||| Sbjct 978 AGGGTC--TCGAACTCCTC-CCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCAC 922 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 || | | ||| ||||| | | | |||| ||||| |||||||| || ||||||||| Sbjct 921 ATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGA 862 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || | || || || | || | |||||| || || ||||| |||||| | | Sbjct 861 GCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAG 802 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 || | | | |||| ||||| || || | ||| || || | | | || || || ||| Sbjct 801 AAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTG 742 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || || || || | ||| | ||| |||||||| | || | | ||| |||| | | Sbjct 741 TTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACA 682 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAA 72292 || || || | ||| ||||| || | || || || | || || || || | Sbjct 681 CCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACA 622 Query 72293 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 72352 ||| ||||| || || || |||||||| ||||| | ||||| || | || || | Sbjct 621 TTG--AGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGT 564 Query 72353 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 72412 |||| ||||| ||| || ||| |||| | | || || || |||| || Sbjct 563 AGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCT 504 Query 72413 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTA 72472 || || || || || || | |||||||| ||||| ||||| | || |||| | Sbjct 503 GAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACATCA 444 Query 72473 GATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATGTATTCCTACCGCGACA 72528 | ||||| || || || | ||| | || || |||| || || |||||| Sbjct 443 GGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAGATG----CCCACAGCGACA 388 Query 72529 CGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGAT 72588 ||||| | ||| ||||||||||| || | |||||| | | |||| | ||| ||| Sbjct 387 CGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGAT 328 Query 72589 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 | ||||| || || || || || || | || ||||| || ||||| Sbjct 327 CTCTCCAAGGTCTTGAAGCCGAAGTATTGATAGTTGAAGTCGCGGTCGTA 278 >seq90 Length=51520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||| |||||||||||| || | | || | || ||||| || || || Sbjct 5238 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGA 5297 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || |||||||| || ||||| || ||||| ||||| | ||| ||||| Sbjct 5298 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAA 5357 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT---GT 42241 || || || || || || || |||| || | || | | || | |||| Sbjct 5358 ATACCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGAGGACTTCTCATCGCTA 5417 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 |||||||| ||||||| ||||||||||| Sbjct 5418 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 5446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671068268975800