Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1012 134 2e-26 seq90 129 9e-25 >seq1012 Length=16087 Score = 134 bits (148), Expect = 2e-26 Identities = 332/500 (66%), Gaps = 8/500 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || ||||| || || || || ||| | || | ||| | || ||||||||||| ||| Sbjct 731 CAAGGTGGCAACAAGCGCCCCGGTGCTTTTGCTATTTACCTCGAGCCTTGGCACGCTGAC 790 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || ||||| | || | ||||| ||| |||| || |||| || ||| | ||| Sbjct 791 GTCTTCGACTTCTTGGATCTTCGCAAGAACCATGGCAAGGAGGAGGTCCGCGCCCGCGAC 850 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052 | || || || ||| | || ||| | ||||||||| | || || |||| | Sbjct 851 CTTTTCCTCGCTCTTTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAAGAACGGAG-- 908 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || ||||| |||| |||| || || ||| Sbjct 909 -ACTGGACTCTCATGTGCCCCAACGAGTGTCCTGGTCTTGCCGACTGCTACGGGGAGGAG 967 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || ||| || |||| | |||||||| |||| | || |||| | || | || Sbjct 968 TTCGAGACCCTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCA-TCAAGGC 1026 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | | || ||| | ||||| | ||||||| ||||| || | || | ||| || Sbjct 1027 CCAAAAGCTCTGGTATGCCATTCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCATGCT 1086 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||||| | | || ||||| |||||||| || |||| || ||| |||| Sbjct 1087 CTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTACTATCCGTAGCTC 1146 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCT 97351 ||| || ||||| || || | || ||| | | || || ||| || || || || Sbjct 1147 CAACCTCTGCACTGAGATCATCGAATACTGCGCGCCTGATGAGGTCGCTGTATGTAACCT 1206 Query 97352 GGCATCGGTCAATCTGCCCA 97371 ||| ||| || ||||||| Sbjct 1207 GGCCTCGCTCGCCCTGCCCA 1226 >seq90 Length=51520 Score = 129 bits (142), Expect = 9e-25 Identities = 341/516 (66%), Gaps = 25/516 (5%) Strand=Plus/Minus Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAA 125407 ||| || || | || ||||| ||||| | |||| | |||||| || || || Sbjct 5465 CACAGTTCCTTGCATTCGTAAGAAGGCCGACTGGGCTCTCAAGTGGATTAGCGATGAGAA 5406 Query 125408 GTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG 125467 ||| || | |||| | | ||||| |||||||| ||||| ||||| || ||||| || Sbjct 5405 GTCCTCCTTCGCCCAGCGCCTGGTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGG 5346 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 ||||| | ||||| |||||||||||||| || ||||||||||| ||||| | Sbjct 5345 CGCCTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTC 5286 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 || ||| |||| ||||| |||||||| || ||| ||||| ||| || ||| Sbjct 5285 CAATGAGCTTATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCTTGT---- 5230 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATC---AACATTGTAAC 125644 ||| | | | | || | | ||||| | |||| ||| ||||| | Sbjct 5229 --ACTCT---CACCTCAAGAACCGCCCCAGC---AAGCAGGTTATCCAGGACATTATTGT 5178 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||| || || ||| ||||| ||||| || || || |||| || | || | || Sbjct 5177 CGACGCTGTCCAGATTGAACAGGAGTTCCTGACAGAGGCCCTTCCTTGTGCCCTGCTCGG 5118 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 |||||||| || || ||| ||||||| ||||| || || || || || || Sbjct 5117 CATGAACTCCAGCCTGATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTG----- 5063 Query 125765 GTTG--ATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 |||| ||||| || |||| | ||||| | || |||||||| |||||| | | Sbjct 5062 GTTGCCCTTGGCAACGACAAGGTCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAAC 5003 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 || || || | || ||||||||||| || |||||| Sbjct 5002 ATCTCCCTGGGCGGAAAGACCAACTTCTTTGAGAAG 4967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740980879305800