Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq29 98.7 9e-16 >seq29 Length=68774 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/231 (71%), Gaps = 12/231 (5%) Strand=Plus/Minus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAG 99603 ||||| || || | |||||||| || || ||||||||| ||||||| |||| | Sbjct 7732 CGCACCGTCAGGCACGTGTTGAGGAGGAGGACGCCGCGGTCTGCCCAGGGGGTCAGGAGG 7673 Query 99604 CCG----TGCTGCGGCCGCGGGGTCCCGG---GGAAGTTCTTCTGCACGGCCGCGTAGAT 99656 ||| || || || |||||| || || ||| |||| | ||| ||| || Sbjct 7672 CCGCCCTTGTTG-GGAGGCGGGGAGAAGGTTGGGTAGTCTTTCTTGAGGGCGATGTACAT 7614 Query 99657 GTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTC--ACGCTGAAGGCCAGGCCGTGG 99714 ||||| || |||||| |||| | || || | ||| |||||| ||||||||| Sbjct 7613 GTTCTTAAGCGAGGGCGGTGCCGGA--GTCGGGGGACGGACGGAGAAGGCGAGGCCGTGG 7556 Query 99715 GCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGACG 99765 ||||| |||| ||||||||||||| ||||| ||||| |||||||||||| Sbjct 7555 GCCTGGTTGTGGTTGTGGTAGGGGTCTTGGCCAAGGATAACGACCTTGACG 7505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440852602465800