Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq460 104 5e-17 >seq460 Length=27106 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || || || || || | |||||| || || || |||||| Sbjct 24815 GTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAGCTGCTTTCCA 24756 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || |||||||| || || || ||||| |||||||| | ||| Sbjct 24755 GCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGAATCTTGGATTTA 24696 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || | || ||||| || ||||| ||||| || || | || Sbjct 24695 ACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTCTTGCCGGTCAAGGTC 24636 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 24635 TTGACGAAGATTTGCAT 24619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151273669371140