Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq460 100 3e-16 seq1955 84.2 2e-11 >seq460 Length=27106 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | ||| || ||||| || | ||| || ||| || |||| ||| || Sbjct 24600 CACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTC 24541 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| |||||| | || || || | |||||||| |||||||| || || ||||| | Sbjct 24540 CAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTG 24481 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || | |||||| | | | ||||| | ||||| || | |||||||| || Sbjct 24480 GATCTTGGATTTGACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTCTT 24421 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | || || |||||||||||||| Sbjct 24420 TCCGGTCAAGGTCTTGACAAAGATCTGCAT 24391 >seq1955 Length=8910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||| | || || ||||| || | ||| || ||| || ||| | Sbjct 3778 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 3719 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| |||||| | ||||| | | ||||| || || || || || || ||| Sbjct 3718 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 3659 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| | ||| ||||| | || || || | ||||| Sbjct 3658 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATA 3599 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 || || || || || || ||||| |||||||||||| || Sbjct 3598 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATT 3560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448243821223800