Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1190 98.7 2e-16
seq4578 95.1 2e-15
>seq1190
Length=14047
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/101 (83%), Gaps = 2/101 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| ||||| || |||| ||| | | || || |||||||| || ||||||||||| |||||
Sbjct 8842 GCCAAGCGCCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 8784
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||||||||| ||||||||||| || ||||||||| | ||||
Sbjct 8783 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATTTCTG 8743
>seq4578
Length=2720
Score = 95.1 bits (104), Expect = 2e-15
Identities = 83/101 (82%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| || | ||| | | || || |||||||| || || |||||||| |||||
Sbjct 1072 GCCAAGCGTCACCGTAAGATTT-TGCGTGACAACATCCAGGGTATTACCAAGCCCGCTAT 1130
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532
||| ||||| |||||||||||||| ||||||||| | ||||
Sbjct 1131 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 1171
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79067469534315
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |