Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1012 145 1e-29 seq90 96.9 4e-15 >seq1012 Length=16087 Score = 145 bits (160), Expect = 1e-29 Identities = 629/981 (64%), Gaps = 34/981 (3%) Strand=Plus/Minus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62956 || ||||| ||||| || || ||||||| || | ||| |||| || ||||||||||| Sbjct 1212 GAGGCCAGGTTACATACAGCGACCTCATCAGGCGC-GCAGTATTCGATGATCTCAGTGCA 1154 Query 62957 AAGATTA---CTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 63013 || || |||| |||||| || | || | || || ||||| ||| || Sbjct 1153 GAGGTTGGAGCTACG---GATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGC 1097 Query 63014 ATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63073 |||||| || || ||||| || | || || || |||||| || | ||| || | ||| Sbjct 1096 ATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCA 1037 Query 63074 GACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGTGT 63127 || | | ||||| || | ||| | |||| | | | ||||| | || Sbjct 1036 GAGCTTTTGGGCCTTGATGGTC---TTGCGAC-CCTTGCCCATCTGCTCGTACTTCTCGT 981 Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGAC 63186 | | || |||||||| || ||| | || | ||| |||||||| || | || | Sbjct 980 ACAGGGTC--TCGAACTCCTC-CCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGC 924 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 |||| | | ||| ||||||| | || ||||| ||||| |||||||| || ||||||| Sbjct 923 ACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAA 864 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 |||| | || || || | || | ||||| || || ||||| |||||| | Sbjct 863 GAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCA 804 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 ||| | | | |||| ||||| || || | ||| || || | | | || || || | Sbjct 803 AGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCT 744 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 |||| || || || || | ||| | ||| |||||||| | || | | ||| |||| | Sbjct 743 TGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGA 684 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 63484 |||||| || |||| ||||| || | || || || | || || || | Sbjct 683 CACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGA 624 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 |||| ||||| || || || |||||||| ||||| | ||||| || | ||||| Sbjct 623 CATTG--AGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTC 566 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 ||||||||||| || || || |||| | | || || || |||| || Sbjct 565 GTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGC 506 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664 || || || || || || | |||||||| ||||| ||||| | || || | Sbjct 505 CTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACAT 446 Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGA 63720 || ||||| || || || | || | || || |||| || || |||| Sbjct 445 CAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAGATG----CCCACAGCGA 390 Query 63721 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGG 63780 ||||||| | ||||||||||||||| || | |||||| || | |||| | ||| | Sbjct 389 CACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACG 330 Query 63781 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63840 || | ||||| || || || || || || | || ||||| || ||||| | || Sbjct 329 ATCTCTCCAAGGTCTTGAAGCCGAAGTATTGATAGTTGAAGTCGCGGTCGTAGACGATGG 270 Query 63841 CCGAGTTGAGTTTATCCTTAT 63861 | |||| || | ||||||| Sbjct 269 CAGAGTCAAGCTCCTCCTTAT 249 >seq90 Length=51520 Score = 96.9 bits (106), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||||||||||||||| | | || || || ||||| || || || Sbjct 5238 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGA 5297 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || |||||||| || ||||| || || || || || | ||| ||||| Sbjct 5298 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAA 5357 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 33480 || || || || ||||| || |||| || | || | | || | |||| Sbjct 5358 ATACCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGAGGACTTCTCATCGCTA 5417 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTT 33509 |||||||| ||||||| ||||||||||| Sbjct 5418 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 5446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622881362267800