Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1012 120 3e-22 seq460 98.7 1e-15 >seq1012 Length=16087 Score = 120 bits (132), Expect = 3e-22 Identities = 419/642 (65%), Gaps = 19/642 (3%) Strand=Plus/Minus Query 148250 CTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTTTAAACCGGGACA 148309 |||||| || ||||| ||| |||||| || | || ||||| ||| | ||| ||||| Sbjct 994 CTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACA 935 Query 148310 CTCGTCGGGGCACATCAATGACCATT-TCCCTCCTGTCTTTACCCTCTTCATAAACAGAT 148368 ||||| ||||||||| | | ||| | ||| | || ||| || |||||||| || |||| Sbjct 934 CTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCT-TCTCCACTCTCTTCATGAAGAGAT 876 Query 148369 CAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC---GGCACCCATAT 148425 | || |||| | || | | ||| ||||| || | ||||| | || | | Sbjct 875 CGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCT 816 Query 148426 TGCGCTTTAGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTCGATGTATACGGTCA 148485 |||| |||||||| || || ||||| |||||||||||||||| ||| | | | Sbjct 815 TGCGA---AGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAA 759 Query 148486 TGGCGCC---TTTCCTTTTACCTCCTTGATCGACATGGCGTAGCA-TGCTATTAAAAACA 148541 || || | | || || ||||| ||||| | ||| |||| || |||| || ||| Sbjct 758 AAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCG-AGCAGTGTTATTGAAGACA 700 Query 148542 CGCA--ATGCAGGTCCCAATCCCGCCGCAGTTCCGTTTGTGGATTCAATTTTACTATTGG 148599 || | ||| || | | || | || ||||| ||| |||| | | || Sbjct 699 CGGAGCATG--GGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGG 642 Query 148600 TGGCGCGAATTTGAGTGACATTCAGGCCGATGCCGCCTCCGTGTTTAGATATCATGGCAC 148659 | ||||| || | |||||| || || ||||| || | ||| || ||||| || | Sbjct 641 TAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCGC 582 Query 148660 AATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAATGTTAAGCAGGTAGC 148719 | ||||| || | ||||| || | ||| |||||| | || | | ||| ||| Sbjct 581 AGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGC 522 Query 148720 ACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGGACTAGCGTGAGTGA 148779 | || |||| |||| | |||| | || || || ||| |||||||| | Sbjct 521 AAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAA 462 Query 148780 ACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGATGTCATCACCATGA 148838 | | | |||| || ||||| | |||| |||||| ||| ||| | |||||| || Sbjct 461 AGAAC-TTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAG 403 Query 148839 ATCTGTAGAGCTACACGCATCAGCATGTGTTGAGGCCTCTCG 148880 || | ||| |||||||| | |||||| ||||| |||||| Sbjct 402 ATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCG 361 >seq460 Length=27106 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || ||||| | ||||| |||| | |||||| | Sbjct 24391 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTCGAGGTCGAATCATCC 24450 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| ||||| ||||| || || || ||||||||||| Sbjct 24451 GACACCATTGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCAG 24510 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || ||| || || || ||||||| | | | | |||||| ||| Sbjct 24511 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAAC 24570 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || ||| |||| || || || Sbjct 24571 ATTCAGAAGGAGTCGACTCTCCACCTTGTGCT 24602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478611811367600