Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1012 385 1e-101 >seq1012 Length=16087 Score = 385 bits (426), Expect = 1e-101 Identities = 1131/1722 (66%), Gaps = 32/1722 (2%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||| | |||||||| ||| | || ||| || || ||||| || Sbjct 368 CCTCAGCACATGATCATGCGTGTCGCTGTGGGCATCTGGGGCGATGACGTTGAACGCGTC 427 Query 363514 ATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACAATGTA 363572 || ||||| || || || | | || || | || || |||||| | || || | | Sbjct 428 ATCGAAACCTACAACCTGATGTCGAGCAAGT-TCTTTACTCACGCCTCTCCTACGCTCTT 486 Query 363573 CAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGA 363632 ||| || || || | | | | ||| |||| |||||||| ||| | | |||||||| || Sbjct 487 CAACGCCGGCACCCCTCAGGCTCAGCTGTCCTCTTGCTTCCTTGTCGATATGAAGGAGGA 546 Query 363633 TTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGG 363692 || ||||||||||||| ||||| || |||| || ||| | || ||||| | || || Sbjct 547 CTCTATCGAGGGTATCTACGACACCCTCAAGACCTGCGCTATGATCTCCAAAATGGCCGG 606 Query 363693 CGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCACAG 363751 || |||||| | ||||| | || || || | | ||||||| ||||| Sbjct 607 TGGCATTGGTCTCAATGTCCACCGCATCCGCGCTACCGG-CTCTTACATTGCTGGCACCA 665 Query 363752 GGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACG 363811 || ||| || || | ||||||||||| ||||| || | || ||||| | |||| Sbjct 666 ACGGTACCTCTAACGGTGTCGTTCCCATGCTCCGTGTCTTCAATAACACTGCTCGCTACG 725 Query 363812 TCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATG 363871 ||||||| ||||| |||||| || || |||||||| || ||||||||| || | Sbjct 726 TCGACCAAGGTGGCAACAAGCGCCCCGGTGCTTTTGCTATTTACCTCGAGCCTTGGCACG 785 Query 363872 CCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCAC 363931 | || | || || || | || || || || ||| || || ||||| | || || | Sbjct 786 CTGACGTCTTCGACTTCTTGGATCTTCGCAAGAACCATGGCAAGGAGGAGGTCCGCGCCC 845 Query 363932 GTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTA 363991 | || || ||| || |||||| | | || | || |||||| | |||||| || Sbjct 846 GCGACCTTTTCCTCGCTCTTTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGA-AGAAC 904 Query 363992 AGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGA-TG-TATGGGGTG 364048 || | ||| | ||| | ||||| |||| ||||| |||||| |||| || || |||| | Sbjct 905 GGAGACTGGACTCTCATGTGCCCCAACGAGTGTCCTGGTCTTGCCGACTGCTACGGGGAG 964 Query 364049 ACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTC 364108 || | | | || ||||| ||||| || | ||| |||| ||| ||||| || Sbjct 965 --GAGTTCGAGACCCTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCGCAAGACCATCA 1022 Query 364109 CCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATA 364168 || || ||||| |||| |||||| | || | |||| ||||| || | |||| | Sbjct 1023 AGGCCCAAAAGCTCTGGTATGCCATTCTCGAGGCTCAGACCGAGACCGGCAACCCCTTCA 1082 Query 364169 TGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGC 364228 || | ||||| ||| | |||||||||| ||||||| || |||| ||||| || | | Sbjct 1083 TGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTACTATCC-GT 1141 Query 364229 AGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGT 364287 || | ||||| || || ||||| || |||||| ||| || || ||| || |||||| Sbjct 1142 AGCTCCAACCTCTGCACTGAGATCATCGAATACTGCGCGCCTGATGAGGTCGCTGTATGT 1201 Query 364288 AACCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTTTTGACCAC 364341 ||||| || ||| |||| || || | || || || || ||| | ||| | Sbjct 1202 AACCTGGCCTCGCTCGCCCTGCCCACCTTCGTTGACTACAACGAGGGTGTCTACGACTTC 1261 Query 364342 CAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAG 364401 ||| | || | || || ||| | | | | | || ||| ||| |||||||| Sbjct 1262 CAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGTAACCTCAACAGAATTATCGACGTC 1321 Query 364402 AATTATTATCCAATTCCTGAAGC-CG----AGCGTTCTAATATGCGTCATCGCCCGATTG 364456 || | || || | | || || || ||| || ||||| || ||||| |||| Sbjct 1322 AACCACTACCCGGTCCAGGAGGCTCGCAACAGC-----AACATGCGCCACCGCCCCATTG 1376 Query 364457 GTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGC 364516 |||| ||||| ||||| || || || | || || ||| ||| | ||||| || | Sbjct 1377 GTCTCGGTGTTCAGGGTCTTGCCGATGCCTTCTTGGCTCTCCGCATGCCCTTTGAGTCCC 1436 Query 364517 CTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTG 364576 | || ||||||| || || ||| |||| || || ||||| || || || | || Sbjct 1437 CCGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCACGCTGCCCTTACCA 1496 Query 364577 CTTCGTGTG-ATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTT 364635 ||| ||| | ||||| | |||| ||| || || ||||| |||||| || Sbjct 1497 TGTCG-GTGCAGTTGGCCAGGGAGGAGGGTCCCTACGAGACGTACGAGGGTTCCCCTGTT 1555 Query 364636 TCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGG 364695 || ||||| | |||||| || | |||||||| | ||| || | | ||| ||||| Sbjct 1556 TCTCAGGGCATCCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGACTGG 1615 Query 364696 GATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCC 364754 ||| | || | | | | | ||| |||| ||| |||||||| || || ||||| Sbjct 1616 GATGCTCTGAAGGAGC-AGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTTGTCGCGCC 1674 Query 364755 CATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTAC 364814 |||||| || || || | |||||| | || ||||| ||||||||||| || | || Sbjct 1675 CATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTACAC 1734 Query 364815 AAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCT 364874 ||| | ||| ||||| || ||| | || || |||| |||||| || | || Sbjct 1735 CTCGAATATCTATCAGCGCCGTGTCCTTGCTGGCGAGTTTCAGGTAGTCAACCCTTGGCT 1794 Query 364875 AGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGC 364934 | ||||| || ||| || |||||| || ||||||||| ||| || || Sbjct 1795 CTTGAAGGACCTCGTCGATATGGGCCTGTGGTCCGATGCTATGAAGAACCGTATTATTGC 1854 Query 364935 CGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAA 364994 || || |||||| | |||||||| || |||| || | || | | ||||| Sbjct 1855 CGAGAACGGTTCTATTCAGAACATCCCCAACATTCCTACCGAGGTCAAAGCACTGTACAA 1914 Query 364995 AACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTT 365054 ||||| |||||||| ||| ||| || || | | ||||| ||||| || ||||| || Sbjct 1915 GACCGTTTGGGAAATCTCCCAGCGTACCGTCGTGCAGATGGCTGCCGACCGTGGTGCCTT 1974 Query 365055 TATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTAC 365114 ||| ||| |||||| ||||| | ||||| | ||||| | |||| | || Sbjct 1975 CATCGACCAGTCGCAGTCGCTTAACATCCACATGAAGGACCCAACTATGGGCAAGATCAC 2034 Query 365115 ATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||| ||| || ||||| |||||| ||||| || Sbjct 2035 CAGCATGCACTTCGCTGGTTGGAAGCTCGGTCTGAAGACGGG 2076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303212408111810