Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1012 141 9e-29 seq1955 134 1e-26 seq460 120 3e-22 seq395 104 2e-17 >seq1012 Length=16087 Score = 141 bits (156), Expect = 9e-29 Identities = 954/1510 (63%), Gaps = 61/1510 (4%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| |||||||||||||| || | ||||| ||| ||| | || || ||| |||| Sbjct 1785 TTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGC 1726 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||| || ||||||| ||| |||| ||| | || || |||||| ||| || Sbjct 1725 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACA 1666 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | ||||||| |||||| | ||||| || | | |||| ||||| Sbjct 1665 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAG 1606 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCT-CGCTGGCGGGGCT 145296 || | ||| | || | ||||||||||||||| | ||||||| | |||| Sbjct 1605 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAA 1546 Query 145297 GCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAAC-TCGCCTCCAGAG 145355 ||| | | | | ||| ||| |||| | || ||| | | || | Sbjct 1545 CCCTCGTACGTCTC-GTAGGGACCCTCCTCCCTGGCCAACT-GCACCGACATGGTAAGGG 1488 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAG--CAGCATCGCTTCATCGCTCTC 145413 | || || ||||||||| || | | ||||||| || | ||||| | ||| Sbjct 1487 CAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGA--GCTTCGGGGGACTC 1430 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | |||||||| || | || |||||||| || ||||| | || | || ||||| Sbjct 1429 AAAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGG 1370 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAAT 145533 || || ||||||||| | | ||| || || || || | || ||||||||| Sbjct 1369 GCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAAT 1310 Query 145534 TTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCG 145593 | | || | ||| || || || |||| || | | | | ||| | ||||| | Sbjct 1309 TCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTAGAC 1250 Query 145594 AGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGT 145653 | |||||| | | || || | | ||||| ||| |||| ||||| || || Sbjct 1249 ACCCTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGAC 1190 Query 145654 CTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTTGATGG 145709 ||| || |||| ||| ||||| | |||||| | ||| | || ||||| ||| | Sbjct 1189 CTCATCAGGCG-CGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTAC---GGATAG 1134 Query 145710 TTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTC 145769 | ||||| || | ||| || || || | |||| || ||||||||||||||| | || Sbjct 1133 TACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGT 1074 Query 145770 CGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACCT 145826 ||| ||||| ||| | ||| | || | | | | || | || || | | Sbjct 1073 TGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGC---TTTTGGGC-----CTT 1022 Query 145827 GCTGCTGGTAGCGGCCCT----CTTCT--TCGTATTTCCTGTAGAGCTCCTCAAACGCGG 145880 | || | | ||| |||| | ||| ||||| ||| ||| || ||| ||| | Sbjct 1021 GATGGT-CTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGGTCTCGAACTCCT 963 Query 145881 AACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGT 145940 |||||||| |||| || || ||||||| |||||| ||||| || | ||| | |||| Sbjct 962 CCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGT 903 Query 145941 TGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCG 146000 | | || | || ||| || | ||| || | ||| || ||| | | |||||| | Sbjct 902 TCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGG 843 Query 146001 CTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAATTAAGCACACTATAGATGTCCGC 146058 | | ||||| ||||| ||| || | ||| | | | ||| ||| || Sbjct 842 CGCGGACCTCCTC-CTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGA-AGACGTCAGC 785 Query 146059 GTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCAC 146115 |||||| || || | || | || | || || || |||||||| ||||| || Sbjct 784 GTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGAC 725 Query 146116 GTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTT 146175 || || | |||| || ||||| || | |||||| |||| ||| | | ||||| Sbjct 724 GTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTT 665 Query 146176 CGT---AG-AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGAC 146231 || || | | || | |||| | ||| | || || ||||| | || | | Sbjct 664 GGTGCCAGCAATGTA----AGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGC 609 Query 146232 CGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGC 146291 | ||| | ||||| || |||||| ||| || |||||||| || || || Sbjct 608 CACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAG 549 Query 146292 TATC--GCTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGC 146349 || |||| || ||| || ||||| ||| ||| ||| ||| || || || || Sbjct 548 AGTCCTCCTTC--ATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGC 491 Query 146350 CGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCG---ATACGT 146406 ||| | ||| || ||||| ||||| | || |||| |||| | || || Sbjct 490 GTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTT---GCTCGACATCAGGTTGTAGGT 434 Query 146407 TTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTG 146466 |||||| || || || ||| ||||| ||||||| |||||| ||||||| |||||| Sbjct 433 TTCGATGACGCGTTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTG 374 Query 146467 TTGGGGCCGCTCCGCCA-CTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTT 146525 || || | ||| || | |||| ||||| ||| | | || |||||| ||| | Sbjct 373 CTGAGGTCTCTCGGCAATCTTG-CCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCT 315 Query 146526 TGTATCCGAA 146535 || | ||||| Sbjct 314 TGAAGCCGAA 305 >seq1955 Length=8910 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||||| | || | ||| |||||||| || |||||||| ||| | Sbjct 3790 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3731 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||||||||||| || ||| Sbjct 3730 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 3671 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 3670 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3611 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | || || || || || || || ||||| |||||||||| Sbjct 3610 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGA 3562 >seq460 Length=27106 Score = 120 bits (132), Expect = 3e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| |||||||| || |||||||| ||| Sbjct 24389 CCACCACGGAGACGAAGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 24330 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||| || || ||| Sbjct 24329 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGG 24270 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||| | | || | ||||| | |||||||| Sbjct 24269 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATGGTATCAGAGGACTCGACC 24210 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| || | ||| || ||||| Sbjct 24209 TCGAGAGTGATGGTCTTGCCGGT 24187 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| || || | || | ||||||||||| |||||||||||||||||| Sbjct 24845 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTC 24786 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || | || | |||||||||||| |||||| Sbjct 24785 AGGGTGCGACCGTCCTCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGG 24726 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || || || || || ||| | | | || | | | || | || || | ||||| | Sbjct 24725 ATACCCTCCTTATC-TTGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAAC 24667 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || ||||| | || || ||||| || ||||| Sbjct 24666 CTCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | || | ||||||||||| ||||||||||| ||| | Sbjct 24617 CCACCACGGAGACGAAGCACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 24558 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || |||||||| || ||| | || ||||||||||| || ||||| Sbjct 24557 AAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCGGGAGGA 24498 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || |||| | || | || |||| || |||| Sbjct 24497 ATGCCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCAATGGTGTCGGATGATTCGACC 24438 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || ||||| | || || || || |||||||| Sbjct 24437 TCGAGTGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 24391 >seq395 Length=29552 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| | ||| || ||||| ||||||||||| ||| ||| Sbjct 1186 CCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1127 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || ||||||||||| || ||||| || || ||||| ||| || ||||| | | Sbjct 1126 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1067 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||||| ||| ||||| || || || || |||| Sbjct 1066 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 1007 Query 131225 AA 131226 || Sbjct 1006 AA 1005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471962914147200