Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2520 136 3e-27
seq112 111 1e-19
>seq2520
Length=6748
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 5404 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5345
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 5344 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 5310
>seq112
Length=48623
Score = 111 bits (122), Expect = 1e-19
Identities = 201/294 (68%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253
|||||| ||||| |||||||| ||| | ||| | ||||| ||||||| ||||| ||
Sbjct 39465 GGACGCTTTCTATCGCTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 39524
Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313
||| || || ||||| | |||||| || |||||| || | |||| || || |
Sbjct 39525 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTCGCTCAGTCCCTCGCCCGTCCCGG 39584
Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|||| | || || ||||| | ||| || || || ||||| | | || | |
Sbjct 39585 TGCCTATGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 39644
Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433
|||| |||| ||| | ||||| || || || | ||||||||||||||| || ||
Sbjct 39645 CGACGACCGCTGGATCATCAACGGCTCCCACAATGCCGCCAAGCTGCAGGACCACCTCGA 39704
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|||||| || |||||| || || || | | ||| | ||||| ||||| ||
Sbjct 39705 CGGCTTCATCAACAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACAGA 39758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334912685261105
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |