Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2520 136 3e-27 seq112 111 1e-19 >seq2520 Length=6748 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 5404 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 5345 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5344 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 5310 >seq112 Length=48623 Score = 111 bits (122), Expect = 1e-19 Identities = 201/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 |||||| ||||| |||||||| ||| | ||| | ||||| ||||||| ||||| || Sbjct 39465 GGACGCTTTCTATCGCTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 39524 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 ||| || || ||||| | |||||| || |||||| || | |||| || || | Sbjct 39525 CGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTCGCTCAGTCCCTCGCCCGTCCCGG 39584 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 |||| | || || ||||| | ||| || || || ||||| | | || | | Sbjct 39585 TGCCTATGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 39644 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| | ||||| || || || | ||||||||||||||| || || Sbjct 39645 CGACGACCGCTGGATCATCAACGGCTCCCACAATGCCGCCAAGCTGCAGGACCACCTCGA 39704 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||| || |||||| || || || | | ||| | ||||| ||||| || Sbjct 39705 CGGCTTCATCAACAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACAGA 39758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334912685261105