Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1012 150 2e-31 seq90 91.5 2e-13 >seq1012 Length=16087 Score = 150 bits (166), Expect = 2e-31 Identities = 630/980 (64%), Gaps = 32/980 (3%) Strand=Plus/Minus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62811 || ||||| ||||| || || ||||||| || | ||| |||| || ||||||||||| Sbjct 1212 GAGGCCAGGTTACATACAGCGACCTCATCAGGCGC-GCAGTATTCGATGATCTCAGTGCA 1154 Query 62812 AAGATTA---CTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 62868 || || |||| ||| || || | || | || || ||||| ||| || Sbjct 1153 GAGGTTGGAGCTACG---GATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGC 1097 Query 62869 ATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 62928 |||||| || || ||||| || | || || || |||||| || | ||| || | ||| Sbjct 1096 ATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCA 1037 Query 62929 GACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTC--TCTT-TCGTA--TAGTGTA 62983 || | | ||||| || | ||| | ||| | ||| ||||| | ||| Sbjct 1036 GAGCTTTTGGGCCTTGATGGTC---TTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTA 980 Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAGTCCAGGACATTCATCCGGACA 63042 | || |||||||| || ||| | || | | | || |||||||| || | || || Sbjct 979 CAGGGTC--TCGAACTCCTC-CCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCA 923 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||| | | ||| ||||||| | || ||||| ||||| |||||||| || |||||||| Sbjct 922 CATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAG 863 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 ||| | || || || | || | ||||| || || ||||| |||||| | Sbjct 862 AGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAA 803 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 ||| | | | |||| ||||| || || | ||| || || | | | || || || || Sbjct 802 GAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTT 743 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 ||| || || || || | ||| | ||| |||||||| | || | | ||| |||| | Sbjct 742 GTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGAC 683 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTA 63340 ||| || || ||||| ||||| || | || || || | || || || | Sbjct 682 ACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGAC 623 Query 63341 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 63400 |||| ||||| || || || |||||||| ||||| | ||||| || | || || Sbjct 622 ATTG--AGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCG 565 Query 63401 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63460 ||||| ||||| ||| || ||| |||| | | || || || |||| || Sbjct 564 TAGATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCC 505 Query 63461 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGT 63520 || || || || || || | |||||||| ||||||||||| | || || | Sbjct 504 TGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACATC 445 Query 63521 AGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATGAATTCCTACTGCGAC 63576 || ||||| || || || | || | || || |||| || || ||||| Sbjct 444 AGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAGATG----CCCACAGCGAC 389 Query 63577 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63636 |||||| | ||||||||||||||| || | |||||| || | |||| | ||| || Sbjct 388 ACGCATGATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTACGA 329 Query 63637 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63696 | | ||||| || || || || || || | || ||||| || ||||| | || | Sbjct 328 TCTCTCCAAGGTCTTGAAGCCGAAGTATTGATAGTTGAAGTCGCGGTCGTAGACGATGGC 269 Query 63697 CGAGTTGAGTTTATCCTTAT 63716 |||| || | ||||||| Sbjct 268 AGAGTCAAGCTCCTCCTTAT 249 >seq90 Length=51520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| ||| ||||||||||| | | || | || ||||| || || || Sbjct 5238 CAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGA 5297 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || |||||||| || ||||| || || || ||||| | ||| |||||| Sbjct 5298 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAA 5357 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT---GT 32837 || || || || || || || |||| || | || | | || | |||| Sbjct 5358 ATACCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGAGGACTTCTCATCGCTA 5417 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 |||||||| ||||||| ||||||||||| Sbjct 5418 ATCCACTTGAGAGCCCAGTCGGCCTTCTT 5446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633565033018000