Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq90 96.9 4e-15 >seq90 Length=51520 Score = 96.9 bits (106), Expect = 4e-15 Identities = 166/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| | ||| || |||||||| || | ||| ||||| || || || | ||||||| Sbjct 5228 GTACAAGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGA 5287 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| || | ||| || | || || || ||||||||||| || || || ||||| || Sbjct 5288 GAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCC 5347 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 | || || ||||| || ||||| || ||||| || | || | ||| || | ||| Sbjct 5348 ACTGAAGAAAATACCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAA---GGAGGA 5404 Query 93262 ATT---ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || | ||| ||||| || | |||||| ||||| || || ||| ||||| | ||| Sbjct 5405 CTTCTCATCGCTAATCCACTTGAGAGCCCAGTCGGCCTTCTTACGAATGCAAGGAACTGT 5464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556801946774200