Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq90 96.9 4e-15
>seq90
Length=51520
Score = 96.9 bits (106), Expect = 4e-15
Identities = 166/240 (69%), Gaps = 6/240 (3%)
Strand=Plus/Plus
Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141
||||| | ||| || |||||||| || | ||| ||||| || || || | |||||||
Sbjct 5228 GTACAAGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGA 5287
Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201
||| || | ||| || | || || || ||||||||||| || || || ||||| ||
Sbjct 5288 GAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCC 5347
Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261
| || || ||||| || ||||| || ||||| || | || | ||| || | |||
Sbjct 5348 ACTGAAGAAAATACCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAA---GGAGGA 5404
Query 93262 ATT---ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318
|| | ||| ||||| || | |||||| ||||| || || ||| ||||| | |||
Sbjct 5405 CTTCTCATCGCTAATCCACTTGAGAGCCCAGTCGGCCTTCTTACGAATGCAAGGAACTGT 5464
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556801946774200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |