Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq90 136 8e-27 seq357 114 3e-20 seq620 87.8 4e-12 seq197 86.0 1e-11 >seq90 Length=51520 Score = 136 bits (150), Expect = 8e-27 Identities = 310/464 (67%), Gaps = 8/464 (2%) Strand=Plus/Plus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| ||||| | ||| || || | ||||| || ||||| || | ||| || Sbjct 4932 TTCATGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCG 4991 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643 |||| ||||| |||||||||||| |||||||| | | ||||| |||| | | Sbjct 4992 CCCAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTG 5051 Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703 ||||| || || |||| |||||| || || ||||| | ||||| |||||| ||| Sbjct 5052 CCAAGGGCAACCAAGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGCTGGAG 5111 Query 251704 TTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACT 251763 |||||||| | || |||||||| ||||| | ||| |||| ||| | || Sbjct 5112 TTCATGCCGAGCAGGGCACAAGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGACA 5171 Query 251764 GCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGA 251819 || || | | ||| ||| | ||||| | | | | | ||||| || | || Sbjct 5172 GCGTCGACAATAATGTCCTGGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGTGAGA 5227 Query 251820 GTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGA 251879 ||||| ||| | | || | ||||||||||||||| ||| ||| | ||| ||||| Sbjct 5228 GTACAAGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGA 5287 Query 251880 CAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCC 251939 | ||| || ||||| | ||||| ||| ||||||||||||| | | ||||| || Sbjct 5288 GAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCC 5347 Query 251940 AGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCT 251983 | ||| | | ||||||||| | ||||||| ||||||| Sbjct 5348 ACTGAAGAAAATACCCTCGACGGCAGCGAATGCAACCAGGCGCT 5391 >seq357 Length=30818 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || |||| |||||| || ||||| ||||| || ||||||||||| ||||| ||||| Sbjct 16164 CTCCCGTATTGCTGTCATCGGTCCCAACGGTGCCGGCAAGTCTACCCTCATCAATGTCCT 16223 Query 280220 GACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGC 280279 || || ||| | |||| |||| | | |||| ||||| || || || Sbjct 16224 CACCGGTGAGCTCGTCCCCACCCAGGGTGAGATCTACCAGCACGAGAACATCCGTATCGC 16283 Query 280280 TTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCA 280339 ||| || |||||||||||| ||||||||| ||||||||||||| ||| || | Sbjct 16284 CTACATCAAGCAGCACGCTTTCGCCCACATCGATAACCACCTGGACAAGACCCCCTCTGA 16343 Query 280340 ATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||||| |||||||| | | || | ||| |||||| ||| || |||| || Sbjct 16344 GTACATCCAGTGGCG-TTTCCAGACTGGTGAGGATCGTGAGACGATGGACCG 16394 Score = 105 bits (116), Expect = 1e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| |||||| ||||| || |||| ||||||||||| ||| Sbjct 15349 GGTGAGGACCTTTGCAACTGCACTTTCTCTCTCGCCTACGGTGCCAAGATTCTGCTTAAC 15408 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 15409 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGCTACGGTCTTTGCGGTCCCAACGGTTCC 15468 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||| ||||| |||| ||| | || || || ||||| ||| Sbjct 15469 GGCAAGTCCACCCTCATGCGTGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 15527 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || || | ||| || | || ||||||||| | ||||| Sbjct 15528 GTCCGAAGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 15569 Score = 93.3 bits (102), Expect = 9e-14 Identities = 94/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| ||||| || ||| ||||| ||||| | | || || Sbjct 16753 CACTCCCGCATGCGCGGTCTGTCTGGTGGTCAGCGTGTCAAGGTTGTCCTTGCCGCCTGC 16812 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||| | ||||||| |||| || ||||||||||| |||||||| || ||||| || Sbjct 16813 TCT-TGGCAGCGCCCTCACTTGATTGTCCTCGACGAGCCCACCAACTACCTCGACCGTGA 16871 >seq620 Length=22592 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 6269 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 6328 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 6329 CCCACGTCGGGCTCAATTC-CCGTC 6352 >seq197 Length=39693 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| ||||| |||||||||||| |||| | | || ||||| || | Sbjct 20958 GTCGGCTCACTGTCTGGTGGATGGAAGATGAAGTTGGCTTTGGCCCGTGCCATGCTCAAG 20899 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||| || || |||||||| || || || |||||| ||||| |||| | ||| Sbjct 20898 GGCGCCGACGTTCTGCTGCTTGACGAACCTACTAACCACTTGGACGTTGCCAATATTGCC 20839 Query 279816 TGGCTAGTGTCCTACCT 279832 ||||| | | ||||||| Sbjct 20838 TGGCTCGAGGCCTACCT 20822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027725454760655