Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1955 176 8e-39 seq357 141 2e-28 seq460 116 7e-21 seq197 102 2e-16 seq37 84.2 4e-11 >seq1955 Length=8910 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || ||||| Sbjct 3790 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3731 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| || Sbjct 3730 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 3671 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 3670 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3611 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || |||||||||||||| ||||| |||||||| || Sbjct 3610 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 3561 >seq357 Length=30818 Score = 141 bits (156), Expect = 2e-28 Identities = 679/1051 (65%), Gaps = 70/1051 (7%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||||||| ||||||||||||| || || ||| |||||| Sbjct 16358 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 16299 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 16298 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTGGGG 16239 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| ||||||||||| |||||||| |||| |||||| ||||| ||||| || || Sbjct 16238 ACGAGCTCACCGGTGAGGACATTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCGATG 16179 Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTG---CGAGTTCACGTTG--CTGAAGAT--C 225211 || |||| ||||| || | ||| ||| |||| | | | | |||| | | | Sbjct 16178 ACAGCAATACGGGAGCCGAGAGAGCA--CTGGAACGAGATGTCCTGGATCTGAGGCTTGC 16121 Query 225212 TCAGGGCCAGTTTGGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265 || | || | |||| |||| || | ||||||| ||||| | Sbjct 16120 TC-GTACCGG---GGTACTGGAAGGACATCTTGCTGGCACGCAGA------ATGGCCTTG 16071 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| |||||||||||||| ||| || | | | Sbjct 16070 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTAAACTCCATCTCGGAG 16011 Query 225326 TCCTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGG 225382 || | || |||||||| || ||||| || || ||| ||||| | ||| Sbjct 16010 TCGCTAAGCTCGTAGTAGGACTTGGCAGCAG-GGTTCTTCTTG--ACGAACTCCTTGAGG 15954 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACAC 225441 || || ||| | ||||||||| | || |||| || ||||| ||| | ||| || Sbjct 15953 TTACCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGAC 15898 Query 225442 TGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCT 225500 ||| |||||| ||||||||||||| || |||||||||| || | | || | Sbjct 15897 GTTGTCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGACGTGCAGG---GGGAGCTGCA 15841 Query 225501 TGAGGTGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559 |||| || | ||||| ||||| | ||||||| |||||| ||||| ||||| Sbjct 15840 A-AGGTA-GTCCTCCAGCCACTTAACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTCG 15783 Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619 || |||||||| || | | || || ||| || |||| |||||||| ||||| Sbjct 15782 AGGAGCAGGATATCCGGGGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAA 15723 Query 225620 CCCCCGGACAGGGAGCCGAT-------TGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTA 225672 || || || |||| | ||| | || || ||||| ||| |||||| | Sbjct 15722 CCACCAGAAAGGGCGGAGATCTCACCCTTAACCA---TGCTT----TCGGTGAAGCCGAA 15670 Query 225673 CTCCAGGAGCGT---CTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGT 225728 ||| ||| | || || | | || ||||| | | | ||||| | | | | | Sbjct 15669 CTCGTTCAGCTTGGCCTCGACATCGGCCT-GGGAGGTATCGACACCGGCATCCTGGAGCT 15611 Query 225729 CGGACGAGAGGTAA-TC-ATA-TACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGT 225785 | | || | || || || ||||| || | | ||| | ||||| |||||| | Sbjct 15610 TCTTC-ATAGTCCAGTCGATGGTA--GTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCT 15554 Query 225786 CCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAA 225845 | ||| | || ||| || | || | ||||| ||||| | ||| | || | Sbjct 15553 CGACGAAGACGGTCTTGACTTCGGACTGCTTAGGGAAACCCTCAACCTGCTCGTTGTTGA 15494 Query 225846 TCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCC 225905 | ||||| | ||||| |||||| | |||||||||||| || ||||| | | | Sbjct 15493 TGGCACGCATGAGGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGAC 15434 Query 225906 CGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGA 225965 | ||||||| |||| | || ||| || || |||||| |||| ||||| || |||| Sbjct 15433 CACGCTTGAGACGGAGGTGAGTCTGGTTAAGCAGAATCTTGGCACCGTAGGCGAGAGAGA 15374 Query 225966 ACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996 | ||| | ||| ||||||||||||||||| Sbjct 15373 AAGTGCAGTTGCAAAGGTCCTCACCCTCCTC 15343 >seq460 Length=27106 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| ||||| ||||| || || ||||| |||||| Sbjct 24845 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTC 24786 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || ||||| || || Sbjct 24785 AGGGTGCGACCGTCCTCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGG 24726 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||||||||| | || ||| ||||| ||||| | ||| || || Sbjct 24725 ATACCCTCCTTATCTTGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAACC 24666 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || || || | |||||||||||| || ||||| Sbjct 24665 TCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619 >seq197 Length=39693 Score = 102 bits (112), Expect = 2e-16 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033 ||| || |||||||||| |||||||||||| ||| | || || || | |||| || | Sbjct 20290 GGCGTAACGCCACTGGAGGTACTGGTTGGGCGTCTTCTCGAGATGCATTTCAACGTGCTC 20349 Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093 | ||| ||||| | || | || |||| |||||| |||||| || || Sbjct 20350 AAGAGCGTGCTGCTTGATATAACCAATACGCAGGTTGGGGTGCTTCTCTACCTTTCCGGT 20409 Query 225094 AGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153 || || | ||||||| ||||| | ||||||||| |||| |||||| ||||| ||||| Sbjct 20410 GGTGGGATTAACCTCGCCAGTGAGAATCTTGATGAGAGTAGACTTGCCGGCACCGTTGGG 20469 Query 225154 GCCAATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAA 225207 ||| || | | ||| | |||||||| | || ||| || | || | ||| || Sbjct 20470 GCCGATAATGGCAACTCTGGATGACAGAGTAAGCTGGCAGGTGACATCGCTCAA 20523 Score = 93.3 bits (102), Expect = 8e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||| ||||| || ||||||||||| || || | | | | | | ||| |||||| Sbjct 20764 GTCGAGGAAACCGGAGTCGTGGGAAACGATCAAGCTGGTAATCTCGGGGTGGCTCTTGAG 20823 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | |||||| || | ||| ||||||| |||||| ||||||||||| || || Sbjct 20824 GTAGGCCTCGAGCCAGGCAATATTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCAAGCAG 20883 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 ||| | ||| || | |||| ||||| || | | || || |||||| ||||| || || Sbjct 20884 CAGAACGTCGGCGCCCTTGAGCATGGCACGGGCCAAAGCCAACTTCATCTTCCATCCACC 20943 Query 225625 GGACAGGGAGCCGA 225638 ||||| ||||||| Sbjct 20944 AGACAGTGAGCCGA 20957 >seq37 Length=64326 Score = 84.2 bits (92), Expect = 4e-11 Identities = 241/366 (66%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 173086 CCTGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAA 173145 ||||| || | | || ||||| || || | |||||||| || ||| | ||||| ||| Sbjct 26632 CCTGAGGCGGTATAACATTGATACCATCTTTCACTTTGCCGCTCAGTCACATGTTGACCT 26573 Query 173146 CTCGTTCGGTAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCT 173205 || ||||| ||| | || ||| | |||||||||||| || |||||||| || Sbjct 26572 GAGCTTTGGTAATTCGTACGGGTTCACCCACACCAACGTCTACGGCACTCACGTTCTTCT 26513 Query 173206 GGAATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGT 173265 || |||| | | || | || |||| |||||| | | || ||||| || || Sbjct 26512 CGAGAGCGCCAAG---AGTGTTGACATCAAGCGTTTCATCCACATCTCCACCGATGAGGT 26456 Query 173266 ATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCGTCCCTCGAGCC 173325 ||||| ||| || | | | | | || |||||| || || | | || | ||| Sbjct 26455 CTACGGAGAGGTCAATGATGACGACGACGACCTCCTCGA-GACCA-GCAT-TCTTGCGCC 26399 Query 173326 AACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCATATCACAC 173385 || ||||| ||||| || |||||| | ||||| ||| | | | | ||||| | Sbjct 26398 CACTAACCCTTATGCTGCTAGCAAGGCAGCCGCCGAGATGCTCGTTCAGTCTTATCAGAA 26339 Query 173386 ATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTT 173445 | ||||| || |||||| | |||| | ||||| || || |||||||| ||||| Sbjct 26338 GAGTTTTAAGCTTCCCGTCATCATCGTGCGCAGTAACAACGTCTACGGCCCGCACCAGTT 26279 Query 173446 CCCCGA 173451 ||||| Sbjct 26278 TCCCGA 26273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921524996032600