Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq1955 176 8e-39
seq357 141 2e-28
seq460 116 7e-21
seq197 102 2e-16
seq37 84.2 4e-11
>seq1955
Length=8910
Score = 176 bits (194), Expect = 8e-39
Identities = 177/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| |||| ||| || |||||||| || |||||||| || |||||
Sbjct 3790 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3731
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| |||||||| || || | || |||||||| ||
Sbjct 3730 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 3671
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | |||||| ||||||||||| | || || ||
Sbjct 3670 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3611
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464
|| | |||||| || || |||||||||||||| ||||| |||||||| ||
Sbjct 3610 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGAT 3561
>seq357
Length=30818
Score = 141 bits (156), Expect = 2e-28
Identities = 679/1051 (65%), Gaps = 70/1051 (7%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| ||||||| ||||||||||||| || || ||| ||||||
Sbjct 16358 CGCCACTGGATGTACTCAGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGGGCGAAAGCG 16299
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | ||| | || ||
Sbjct 16298 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTGGGG 16239
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
||| ||||||||||| |||||||| |||| |||||| ||||| ||||| || ||
Sbjct 16238 ACGAGCTCACCGGTGAGGACATTGATGAGGGTAGACTTGCCGGCACCGTTGGGACCGATG 16179
Query 225161 ACGCCAATCCGGGAT--GACATTGCAACCTG---CGAGTTCACGTTG--CTGAAGAT--C 225211
|| |||| ||||| || | ||| ||| |||| | | | | |||| | | |
Sbjct 16178 ACAGCAATACGGGAGCCGAGAGAGCA--CTGGAACGAGATGTCCTGGATCTGAGGCTTGC 16121
Query 225212 TCAGGGCCAGTTTGGTAAGCAAAGGCCAC------GCCACGCAGCTTCATGATGGCACGG 225265
|| | || | |||| |||| || | ||||||| ||||| |
Sbjct 16120 TC-GTACCGG---GGTACTGGAAGGACATCTTGCTGGCACGCAGA------ATGGCCTTG 16071
Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325
|||||| | | |||||| ||||| |||||||||||||| ||| || | | |
Sbjct 16070 GCCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGGTAAACTCCATCTCGGAG 16011
Query 225326 TCCTTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGG 225382
|| | || |||||||| || ||||| || || ||| ||||| | |||
Sbjct 16010 TCGCTAAGCTCGTAGTAGGACTTGGCAGCAG-GGTTCTTCTTG--ACGAACTCCTTGAGG 15954
Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACAC 225441
|| || ||| | ||||||||| | || |||| || ||||| ||| | ||| ||
Sbjct 15953 TTACCACGGTAGCGCTTGAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGAC 15898
Query 225442 TGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAGGCCCT 225500
||| |||||| ||||||||||||| || |||||||||| || | | || |
Sbjct 15897 GTTGTCGAGGAAGGCAGAGTCGTGGGAGACGATGATGGACGTGCAGG---GGGAGCTGCA 15841
Query 225501 TGAGGTGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559
|||| || | ||||| ||||| | ||||||| |||||| ||||| |||||
Sbjct 15840 A-AGGTA-GTCCTCCAGCCACTTAACGTTCTTCACGTCCAAGTGGTTGGTAGGCTCGTCG 15783
Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619
|| |||||||| || | | || || ||| || |||| |||||||| |||||
Sbjct 15782 AGGAGCAGGATATCCGGGGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAA 15723
Query 225620 CCCCCGGACAGGGAGCCGAT-------TGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTA 225672
|| || || |||| | ||| | || || ||||| ||| |||||| |
Sbjct 15722 CCACCAGAAAGGGCGGAGATCTCACCCTTAACCA---TGCTT----TCGGTGAAGCCGAA 15670
Query 225673 CTCCAGGAGCGT---CTGGATAATGCGCTCGGGAGAGCT-GCGAGCGGCAACGTTGGGGT 225728
||| ||| | || || | | || ||||| | | | ||||| | | | | |
Sbjct 15669 CTCGTTCAGCTTGGCCTCGACATCGGCCT-GGGAGGTATCGACACCGGCATCCTGGAGCT 15611
Query 225729 CGGACGAGAGGTAA-TC-ATA-TACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGT 225785
| | || | || || || ||||| || | | ||| | ||||| |||||| |
Sbjct 15610 TCTTC-ATAGTCCAGTCGATGGTA--GTCATCTCAGTGTCAGCAGAGTCAAGGTCGTGCT 15554
Query 225786 CCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAA 225845
| ||| | || ||| || | || | ||||| ||||| | ||| | || |
Sbjct 15553 CGACGAAGACGGTCTTGACTTCGGACTGCTTAGGGAAACCCTCAACCTGCTCGTTGTTGA 15494
Query 225846 TCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCC 225905
| ||||| | ||||| |||||| | |||||||||||| || ||||| | | |
Sbjct 15493 TGGCACGCATGAGGGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGAC 15434
Query 225906 CGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGA 225965
| ||||||| |||| | || ||| || || |||||| |||| ||||| || ||||
Sbjct 15433 CACGCTTGAGACGGAGGTGAGTCTGGTTAAGCAGAATCTTGGCACCGTAGGCGAGAGAGA 15374
Query 225966 ACTCGCAATCGCACAGGTCCTCACCCTCCTC 225996
| ||| | ||| |||||||||||||||||
Sbjct 15373 AAGTGCAGTTGCAAAGGTCCTCACCCTCCTC 15343
>seq460
Length=27106
Score = 116 bits (128), Expect = 7e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| ||||| ||||| || || ||||| ||||||
Sbjct 24845 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTC 24786
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || ||||| | || ||||| || ||
Sbjct 24785 AGGGTGCGACCGTCCTCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGG 24726
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||||||||| | || ||| ||||| ||||| | ||| || ||
Sbjct 24725 ATACCCTCCTTATCTTGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAACC 24666
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || || || || | |||||||||||| || |||||
Sbjct 24665 TCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619
>seq197
Length=39693
Score = 102 bits (112), Expect = 2e-16
Identities = 163/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033
||| || |||||||||| |||||||||||| ||| | || || || | |||| || |
Sbjct 20290 GGCGTAACGCCACTGGAGGTACTGGTTGGGCGTCTTCTCGAGATGCATTTCAACGTGCTC 20349
Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093
| ||| ||||| | || | || |||| |||||| |||||| || ||
Sbjct 20350 AAGAGCGTGCTGCTTGATATAACCAATACGCAGGTTGGGGTGCTTCTCTACCTTTCCGGT 20409
Query 225094 AGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153
|| || | ||||||| ||||| | ||||||||| |||| |||||| ||||| |||||
Sbjct 20410 GGTGGGATTAACCTCGCCAGTGAGAATCTTGATGAGAGTAGACTTGCCGGCACCGTTGGG 20469
Query 225154 GCCAATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAA 225207
||| || | | ||| | |||||||| | || ||| || | || | ||| ||
Sbjct 20470 GCCGATAATGGCAACTCTGGATGACAGAGTAAGCTGGCAGGTGACATCGCTCAA 20523
Score = 93.3 bits (102), Expect = 8e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504
||| ||||| || ||||||||||| || || | | | | | | ||| ||||||
Sbjct 20764 GTCGAGGAAACCGGAGTCGTGGGAAACGATCAAGCTGGTAATCTCGGGGTGGCTCTTGAG 20823
Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
|| | |||||| || | ||| ||||||| |||||| ||||||||||| || ||
Sbjct 20824 GTAGGCCTCGAGCCAGGCAATATTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCAAGCAG 20883
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
||| | ||| || | |||| ||||| || | | || || |||||| ||||| || ||
Sbjct 20884 CAGAACGTCGGCGCCCTTGAGCATGGCACGGGCCAAAGCCAACTTCATCTTCCATCCACC 20943
Query 225625 GGACAGGGAGCCGA 225638
||||| |||||||
Sbjct 20944 AGACAGTGAGCCGA 20957
>seq37
Length=64326
Score = 84.2 bits (92), Expect = 4e-11
Identities = 241/366 (66%), Gaps = 6/366 (2%)
Strand=Plus/Minus
Query 173086 CCTGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTGGACAA 173145
||||| || | | || ||||| || || | |||||||| || ||| | ||||| |||
Sbjct 26632 CCTGAGGCGGTATAACATTGATACCATCTTTCACTTTGCCGCTCAGTCACATGTTGACCT 26573
Query 173146 CTCGTTCGGTAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCT 173205
|| ||||| ||| | || ||| | |||||||||||| || |||||||| ||
Sbjct 26572 GAGCTTTGGTAATTCGTACGGGTTCACCCACACCAACGTCTACGGCACTCACGTTCTTCT 26513
Query 173206 GGAATGCGCGAGGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGT 173265
|| |||| | | || | || |||| |||||| | | || ||||| || ||
Sbjct 26512 CGAGAGCGCCAAG---AGTGTTGACATCAAGCGTTTCATCCACATCTCCACCGATGAGGT 26456
Query 173266 ATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGCCTCGATGAACACTCGTCCCTCGAGCC 173325
||||| ||| || | | | | | || |||||| || || | | || | |||
Sbjct 26455 CTACGGAGAGGTCAATGATGACGACGACGACCTCCTCGA-GACCA-GCAT-TCTTGCGCC 26399
Query 173326 AACAAACCCATATGCAGCAGCCAAGGCTGGTGCCGAAATGATGGCACGTGCATATCACAC 173385
|| ||||| ||||| || |||||| | ||||| ||| | | | | ||||| |
Sbjct 26398 CACTAACCCTTATGCTGCTAGCAAGGCAGCCGCCGAGATGCTCGTTCAGTCTTATCAGAA 26339
Query 173386 ATCGTACAAGCTACCAGTCATCGTGACGCGCGGCAACAATGTGTATGGCCCGCATCAGTT 173445
| ||||| || |||||| | |||| | ||||| || || |||||||| |||||
Sbjct 26338 GAGTTTTAAGCTTCCCGTCATCATCGTGCGCAGTAACAACGTCTACGGCCCGCACCAGTT 26279
Query 173446 CCCCGA 173451
|||||
Sbjct 26278 TCCCGA 26273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921524996032600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |