Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1012 410 2e-109 seq90 233 4e-56 >seq1012 Length=16087 Score = 410 bits (454), Expect = 2e-109 Identities = 1148/1734 (66%), Gaps = 77/1734 (4%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| ||| ||| | || |||| || | ||||||||||||||| ||||| Sbjct 2127 ACGGTGAACTGGATGGGCGCGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 2068 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || ||| | || ||||||| || | ||| ||| || ||||| Sbjct 2067 AGACCGAGCTTCCAACCAGCGAAGTGCATGCTGGTGATCTTGCCCAT----AG--TTGGG 2014 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 || | | | || ||| || ||||| |||||||| ||||| | || || Sbjct 2013 TCCTTCATGTG------GATGTTAAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCG 1960 Query 243917 GCGGCCATGGTGATGA-GGTCCT-TCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974 || ||||| | || ||| | | ||||| || || ||| |||||||| | | | Sbjct 1959 GCAGCCATCTGCACGACGGTACGCTGGGAGATTTCCCAAACG--GTCTTGTACAGTGCTT 1902 Query 243975 TGAGGTGCTCGG--GGAACCCTTCG-ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCT 244031 ||| ||||| |||| | | |||||||| | || || || | | | || | Sbjct 1901 TGAC---CTCGGTAGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATAATAC 1845 Query 244032 GGGTGCGCATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGACCAGGTGCCT- 244089 || | ||| |||| ||||||||||| | || | || ||| || | ||| Sbjct 1844 GGTTCTTCATAGCATCGGACCACAGGCCCATATCGA-CGAGGTCCTT---CAAGAGCCAA 1789 Query 244090 --GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||| || ||||||||||| || | || || |||||||| |||| || | || Sbjct 1788 GGGTTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAG 1729 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||||| || ||| ||||||||| ||||| | ||||| |||||||||||||||| Sbjct 1728 GGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCG 1669 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGT 244265 || |||||| ||| | || |||||| || ||| || || |||| | ||||| Sbjct 1668 ACAAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCA--TCCCAGT 1611 Query 244266 CCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325 |||| | ||||| | | | | || ||||||||| |||| || | |||| Sbjct 1610 CCCAGAGATCCGAGGGCT--TAACATT-------CCACATGTCGTACTGGAGGATGCCCT 1560 Query 244326 TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAG 244384 || ||| |||||||| ||| ||||||||| || | ||||| || || | Sbjct 1559 GAGAAACAGGGGAACCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACTGCACCG 1500 Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444 | || ||||| |||| |||||| |||||||| ||| ||||||| | ||| || || Sbjct 1499 ACATGGTA-AGGGCAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCT 1441 Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 | | | | ||||| |||| | || |||| | ||||| || ||||| || ||| Sbjct 1440 TCGGGGGACTCAAAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCG 1381 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTT 244563 | || ||||| | ||| ||| ||||| | || | || | || || ||||| ||| Sbjct 1380 AGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGG-ACCGGGTAGTGGTT 1322 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623 | ||||||| | |||||||||| || | | || ||| ||| ||| ||| Sbjct 1321 GACGTCGATAATTCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTG 1262 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||||||| | | ||||| | | || | || || | ||||||| Sbjct 1261 GAAGTCGTAGAC------ACCCTCGTTG-TAGTCA-----ACGAAGGTGGGCAGGGCGAG 1214 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 ||||||||| || || || ||||| || | | ||| | || ||||| ||||| Sbjct 1213 CGAGGCCAGGTTACATACAGCGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCA 1154 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 |||||| || ||| || ||||||| || || ||| |||| |||| || || Sbjct 1153 GAGGTTGGAGCTACGGATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 1094 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 |||||||||||||||||| ||||||||| ||| || |||| | | | |||||| Sbjct 1093 CTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAG 1034 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGG 244922 | ||||||| ||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 1033 CTTTTGGGCCTTGATGGTCTTGCGACCCTTGCCCATCTGC-TCGTACTTCTCGTACAGGG 975 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 ||||||||| || || ||| | || || || ||| |||||||||||| Sbjct 974 TCTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAG 915 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 |||| || ||| | || || |||| ||||||||| ||||||||||| || || ||| Sbjct 914 TCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGA 855 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 | ||||| | || | ||| ||| |||| |||||| | || ||||| ||||| | Sbjct 854 AAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGA 795 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 ||||||| ||||||| ||||| | ||| | ||| | || ||||| ||||||||||| | Sbjct 794 AGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCAC 735 Query 245163 CCTGGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 | ||||| | | | ||||| | | ||||||| || || | || || | ||| Sbjct 734 CTTGGTCGA----CGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCG 679 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278 |||||| ||||||||||| ||||| | ||| | | | || ||| | ||||| Sbjct 678 TTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGC---GCGGATGC-GGTGGAC 623 Query 245279 AT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 || || | || ||||| |||||||| | |||||| |||||| |||||| Sbjct 622 ATTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTA 563 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 || ||||| || |||| |||||| | || || ||||| ||||||||||| | || Sbjct 562 GATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTG 503 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 ||| ||| | |||||| || || || |||||| |||||| | |||||| Sbjct 502 AGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGA 449 >seq90 Length=51520 Score = 233 bits (258), Expect = 4e-56 Identities = 361/505 (71%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAG 42703 |||||||| |||||||| ||||| ||||| || | || | | | |||| | || | Sbjct 5446 AAGAAGGCCGACTGGGCTCTCAAGTGGATT-AGCGATGAGAAGTCCTCCTTCGCCCAGCG 5388 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 ||||| || || | ||||||||||| || |||||| |||||||| ||||| ||||| Sbjct 5387 CCTGGTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTATCTT 5328 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||||||| || ||| || |||||||| || |||||||| || || || ||| Sbjct 5327 CTGGCTCAAGAAGCGTGGTCTC-ATGCCCGGTCTGACCTTCTCCAATGAGCTTATCTCTC 5269 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | |||||||| ||||| | ||||| ||||||||| ||| ||| ||||||| | || Sbjct 5268 GTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCTTGTACTC---TCACCTCAAGAACC 5212 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 ||| ||| || ||| || ||| || || || || |||| || |||||| Sbjct 5211 GCCCCAGCAAGCAGGTTATCCAGGACATTATTGTCGACGCTGTCCAGATTGAACAGGAGT 5152 Query 42943 TCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 |||| || || | || || ||| ||||| ||||||||||| | ||| ||| || Sbjct 5151 TCCTGACAGAGGCCCTTCCTTGTG-CCCTGCTCGGCATGAACTCCAGCCTGATGAAGCAG 5093 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTCAGCCGCCTCTACA 43059 ||||| ||| ||||||||||| ||| || |||| | || | | |||||| Sbjct 5092 TACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCC--CTTGGCAACGACAAGGTCTACA 5035 Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119 | | | |||||| ||||| |||||||||||||| ||| || ||||||||||| | Sbjct 5034 AGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGAAAGACCAACTTCT 4975 Query 43120 TCGAGAAGCGCGTCGCCGACTACCA 43144 | |||||||| || ||||||||||| Sbjct 4974 TTGAGAAGCGTGTTGCCGACTACCA 4950 Score = 125 bits (138), Expect = 1e-23 Identities = 231/335 (69%), Gaps = 9/335 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| || ||||||||||| || Sbjct 5853 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGATTTG 5794 Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAAAGTTTTTCCTCAAA 42416 | |||||| | || |||| | || || ||| | || |||| ||| || Sbjct 5793 TCTAAGGACCTGCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 5734 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 |||| || |||||||||||||| || |||||||| |||||||||||| ||| | | Sbjct 5733 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 5674 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||| ||| ||||| || |||||||| ||||||||||| || Sbjct 5673 TTCAGCGGCGAGGTTCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAGATCATGATG 5614 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593 |||||| | ||||| ||| ||| | |||||| |||| |||||| ||| || Sbjct 5613 GAGAACATCCACTCCGAGACCTACTC---GTTGCTCATTGACACCTACATCAAGGAGCCG 5557 Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | | |||| | || ||||| ||||| || || Sbjct 5556 GCCCAGCGCACGTACCTCTTCAACGCCATTGACAC 5522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944239395150800