Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 410 2e-109
seq90 233 4e-56
>seq1012
Length=16087
Score = 410 bits (454), Expect = 2e-109
Identities = 1148/1734 (66%), Gaps = 77/1734 (4%)
Strand=Plus/Minus
Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796
||| ||||||||| ||| ||| | || |||| || | ||||||||||||||| |||||
Sbjct 2127 ACGGTGAACTGGATGGGCGCGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 2068
Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856
|| || ||| | || ||||||| || | ||| ||| || |||||
Sbjct 2067 AGACCGAGCTTCCAACCAGCGAAGTGCATGCTGGTGATCTTGCCCAT----AG--TTGGG 2014
Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916
|| | | | || ||| || ||||| |||||||| ||||| | || ||
Sbjct 2013 TCCTTCATGTG------GATGTTAAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCG 1960
Query 243917 GCGGCCATGGTGATGA-GGTCCT-TCTGAGATATCTCATACGCCGTCTTGTAGATGGGCT 243974
|| ||||| | || ||| | | ||||| || || ||| |||||||| | | |
Sbjct 1959 GCAGCCATCTGCACGACGGTACGCTGGGAGATTTCCCAAACG--GTCTTGTACAGTGCTT 1902
Query 243975 TGAGGTGCTCGG--GGAACCCTTCG-ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCT 244031
||| ||||| |||| | | |||||||| | || || || | | | || |
Sbjct 1901 TGAC---CTCGGTAGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATAATAC 1845
Query 244032 GGGTGCGCATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCTCGACCAGGTGCCT- 244089
|| | ||| |||| ||||||||||| | || | || ||| || | |||
Sbjct 1844 GGTTCTTCATAGCATCGGACCACAGGCCCATATCGA-CGAGGTCCTT---CAAGAGCCAA 1789
Query 244090 --GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147
||| || ||||||||||| || | || || |||||||| |||| || | ||
Sbjct 1788 GGGTTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAG 1729
Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207
||||||| || ||| ||||||||| ||||| | ||||| ||||||||||||||||
Sbjct 1728 GGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCG 1669
Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGT 244265
|| |||||| ||| | || |||||| || ||| || || |||| | |||||
Sbjct 1668 ACAAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCA--TCCCAGT 1611
Query 244266 CCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325
|||| | ||||| | | | | || ||||||||| |||| || | ||||
Sbjct 1610 CCCAGAGATCCGAGGGCT--TAACATT-------CCACATGTCGTACTGGAGGATGCCCT 1560
Query 244326 TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAG 244384
|| ||| |||||||| ||| ||||||||| || | ||||| || || |
Sbjct 1559 GAGAAACAGGGGAACCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACTGCACCG 1500
Query 244385 CTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCC 244444
| || ||||| |||| |||||| |||||||| ||| ||||||| | ||| || ||
Sbjct 1499 ACATGGTA-AGGGCAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCT 1441
Query 244445 TTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504
| | | | ||||| |||| | || |||| | ||||| || ||||| || |||
Sbjct 1440 TCGGGGGACTCAAAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCG 1381
Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTT 244563
| || ||||| | ||| ||| ||||| | || | || | || || ||||| |||
Sbjct 1380 AGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTGG-ACCGGGTAGTGGTT 1322
Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623
| ||||||| | |||||||||| || | | || ||| ||| ||| |||
Sbjct 1321 GACGTCGATAATTCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTG 1262
Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683
|||||||| | | ||||| | | || | || || | |||||||
Sbjct 1261 GAAGTCGTAGAC------ACCCTCGTTG-TAGTCA-----ACGAAGGTGGGCAGGGCGAG 1214
Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743
||||||||| || || || ||||| || | | ||| | || ||||| |||||
Sbjct 1213 CGAGGCCAGGTTACATACAGCGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCA 1154
Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803
|||||| || ||| || ||||||| || || ||| |||| |||| || ||
Sbjct 1153 GAGGTTGGAGCTACGGATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 1094
Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863
|||||||||||||||||| ||||||||| ||| || |||| | | | ||||||
Sbjct 1093 CTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAG 1034
Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC-TCTGCCTCGTAGCGGGTGTACAGGG 244922
| ||||||| ||| ||||| |||||||| ||||| ||||| ||||||||
Sbjct 1033 CTTTTGGGCCTTGATGGTCTTGCGACCCTTGCCCATCTGC-TCGTACTTCTCGTACAGGG 975
Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982
||||||||| || || ||| | || || || ||| ||||||||||||
Sbjct 974 TCTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAG 915
Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042
|||| || ||| | || || |||| ||||||||| ||||||||||| || || |||
Sbjct 914 TCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGA 855
Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102
| ||||| | || | ||| ||| |||| |||||| | || ||||| ||||| |
Sbjct 854 AAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGA 795
Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162
||||||| ||||||| ||||| | ||| | ||| | || ||||| ||||||||||| |
Sbjct 794 AGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCAC 735
Query 245163 CCTGGTCCACCATCCTCTCGAGC-GCG---TTGAAGATGCGCAGGGTAGGCACTATGCCG 245218
| ||||| | | | ||||| | | ||||||| || || | || || | |||
Sbjct 734 CTTGGTCGA----CGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCG 679
Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278
|||||| ||||||||||| ||||| | ||| | | | || ||| | |||||
Sbjct 678 TTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGC---GCGGATGC-GGTGGAC 623
Query 245279 AT----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334
|| || | || ||||| |||||||| | |||||| |||||| ||||||
Sbjct 622 ATTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTA 563
Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394
|| ||||| || |||| |||||| | || || ||||| ||||||||||| | ||
Sbjct 562 GATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTG 503
Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448
||| ||| | |||||| || || || |||||| |||||| | ||||||
Sbjct 502 AGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGA 449
>seq90
Length=51520
Score = 233 bits (258), Expect = 4e-56
Identities = 361/505 (71%), Gaps = 13/505 (3%)
Strand=Plus/Minus
Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAG 42703
|||||||| |||||||| ||||| ||||| || | || | | | |||| | || |
Sbjct 5446 AAGAAGGCCGACTGGGCTCTCAAGTGGATT-AGCGATGAGAAGTCCTCCTTCGCCCAGCG 5388
Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763
||||| || || | ||||||||||| || |||||| |||||||| ||||| |||||
Sbjct 5387 CCTGGTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTATCTT 5328
Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822
|||||||||| || ||| || |||||||| || |||||||| || || || |||
Sbjct 5327 CTGGCTCAAGAAGCGTGGTCTC-ATGCCCGGTCTGACCTTCTCCAATGAGCTTATCTCTC 5269
Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882
| |||||||| ||||| | ||||| ||||||||| ||| ||| ||||||| | ||
Sbjct 5268 GTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCTTGTACTC---TCACCTCAAGAACC 5212
Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942
||| ||| || ||| || ||| || || || || |||| || ||||||
Sbjct 5211 GCCCCAGCAAGCAGGTTATCCAGGACATTATTGTCGACGCTGTCCAGATTGAACAGGAGT 5152
Query 42943 TCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001
|||| || || | || || ||| ||||| ||||||||||| | ||| ||| ||
Sbjct 5151 TCCTGACAGAGGCCCTTCCTTGTG-CCCTGCTCGGCATGAACTCCAGCCTGATGAAGCAG 5093
Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTG--TGCCAGATGGGTCTCAGCCGCCTCTACA 43059
||||| ||| ||||||||||| ||| || |||| | || | | ||||||
Sbjct 5092 TACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCC--CTTGGCAACGACAAGGTCTACA 5035
Query 43060 ACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTT 43119
| | | |||||| ||||| |||||||||||||| ||| || ||||||||||| |
Sbjct 5034 AGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGAAAGACCAACTTCT 4975
Query 43120 TCGAGAAGCGCGTCGCCGACTACCA 43144
| |||||||| || |||||||||||
Sbjct 4974 TTGAGAAGCGTGTTGCCGACTACCA 4950
Score = 125 bits (138), Expect = 1e-23
Identities = 231/335 (69%), Gaps = 9/335 (3%)
Strand=Plus/Minus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||||| || |||| |||||| || ||||||||||| ||
Sbjct 5853 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGATTTG 5794
Query 42360 GCCAAGGACACGGCCGGCTGGGAGT-CACTGTCT--GAGAACGAAAAGTTTTTCCTCAAA 42416
| |||||| | || |||| | || || ||| | || |||| ||| ||
Sbjct 5793 TCTAAGGACCTGCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 5734
Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476
|||| || |||||||||||||| || |||||||| |||||||||||| ||| | |
Sbjct 5733 CACATTCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 5674
Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536
|||| ||||| ||| ||||| || |||||||| ||||||||||| ||
Sbjct 5673 TTCAGCGGCGAGGTTCAGGTGCCCGAGGCCCGTTGCTTCTATGGCTTCCAGATCATGATG 5614
Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCC 42593
|||||| | ||||| ||| ||| | |||||| |||| |||||| ||| ||
Sbjct 5613 GAGAACATCCACTCCGAGACCTACTC---GTTGCTCATTGACACCTACATCAAGGAGCCG 5557
Query 42594 GTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628
| | |||| | || ||||| ||||| || ||
Sbjct 5556 GCCCAGCGCACGTACCTCTTCAACGCCATTGACAC 5522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944239395150800
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