Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq162 91.5 1e-13 >seq162 Length=42721 Score = 91.5 bits (100), Expect = 1e-13 Identities = 191/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| || || || || |||||| | | ||||| ||||||||||| | | Sbjct 18123 AACATGTGGCATGGTGGCAGGGCCATCTTCTTTAGATCCGCGGGGTTCCACGCGCTGAGG 18064 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAA-TTGGTC 20490 | ||| | | |||| ||| || | || | | | | || | || ||| |||||| Sbjct 18063 AGGATGCGGCGGTCGTACGGGTTTGTCTTGAGTTTGTGGATAACCT-CGGCAAGTTGGTC 18005 Query 20491 AAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCA 20550 | ||||| || || ||||| | | ||||| |||||| | || |||||||| | ||| Sbjct 18004 GACGCCCTGACCCGTGTAGTCCGTCTTGGCGTCGACGTACTCGGCGCCAAAGTGTCGCCA 17945 Query 20551 CTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCCCGGC 20610 ||||| || || ||||| || | ||| || | || ||||| |||||| | | | Sbjct 17944 TTGGAACCCATAGACAGGGCCGAGATCGCCGACTTCTCGGTGCGAGAGGCCGACGCTGTC 17885 Query 20611 CAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 |||||||| | ||||| || |||||| |||||||| || Sbjct 17884 AAGGAACTCACGCGAGCCGTTACCGTCCCAAATCTTGACGCC 17843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441326152412200