Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1012 187 3e-42 seq90 111 2e-19 >seq1012 Length=16087 Score = 187 bits (206), Expect = 3e-42 Identities = 942/1489 (63%), Gaps = 33/1489 (2%) Strand=Plus/Minus Query 113903 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 113962 ||||| || |||||| || || ||| || | | |||||||||| | ||||| ||| Sbjct 1785 TTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGC 1726 Query 113963 TCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATG 114022 || |||||||||||||| |||||||| || | |||| ||| || |||||||| || | Sbjct 1725 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACA 1666 Query 114023 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 114082 || || ||| |||| ||| | | | | || | ||||| || || |||||||| || Sbjct 1665 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAG 1606 Query 114083 TTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGAT 114142 | | || | | |||||| || |||||||||| || || || | || || Sbjct 1605 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAA 1546 Query 114143 CCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGG 114200 ||||| | |||||||| || ||||| || ||||| | | | | | | |||| Sbjct 1545 CCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAA--CTGCACCGACATGGTAAGGG 1488 Query 114201 CTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAA 114260 | ||||| || |||||||| || || || | | || ||| ||| |||| Sbjct 1487 CAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAA 1428 Query 114261 ACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGC 114320 | | | ||| | || |||| || ||||| || |||||||| ||||| |||| Sbjct 1427 AGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGC 1368 Query 114321 GATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCC 114380 | || | ||| || || ||||| || || || || || ||||||| | Sbjct 1367 GGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTC 1308 Query 114381 TATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGC 114440 | || || || || |||| |||| || || ||||| | | | || | | Sbjct 1307 TGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GA 1251 Query 114441 GAGTCTCTTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGG 114497 | ||| | | | || | | || ||||||| || ||||| ||||| |||| | Sbjct 1250 CACCCTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGA 1191 Query 114498 TCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGC 114557 |||||| | ||| || || || || || || | || || || || || | Sbjct 1190 CCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTAC 1131 Query 114558 CCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCC 114617 ||| |||||| || || ||| ||| ||||||||||| |||||| | || | | Sbjct 1130 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGC 1071 Query 114618 CCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCG 114676 | ||||| || || | || |||||| || | ||||| | | | | || | ||| Sbjct 1070 CGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTG----ATGGTC 1015 Query 114677 TTG----GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCAC 114732 ||| || |||| | || ||||||||| ||| |||| || ||||| || || Sbjct 1014 TTGCGACCCTTGCCCAT-CTGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTA 956 Query 114733 GGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTC 114792 | || | || || || || | ||||| | ||||| ||| | || || ||| Sbjct 955 GCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTC 896 Query 114793 AACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGC 114852 || | |||||||||||| || |||||||| ||||| ||| || || || ||| | Sbjct 895 CACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGAC 836 Query 114853 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 114912 || || | || || || || | ||||| ||||| | || || |||||||| || Sbjct 835 CTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGG 776 Query 114913 TTCCAGGTACACCGCGATTG-AC-----CCCTTACGACGACCAGCCTGGTTTACATACCT 114966 || ||||| | || | | || | ||| | | ||| | |||| || || | Sbjct 775 CTCGAGGTAAATAGCAAAAGCACCGGGGCGCTT--GTTG-CCACCTTGGTCGACGTAGCG 719 Query 114967 CGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCC 115026 || ||| ||| || || || ||||| |||| || ||| | ||| || || || || Sbjct 718 AGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCC 659 Query 115027 CCGAATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCA 115086 ||| ||| | || | || |||| | | |||||| || || ||| Sbjct 658 AGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCAT 599 Query 115087 CTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTT 115146 || ||||| ||||| | |||| || ||||||| || ||||| ||||| |||| Sbjct 598 TTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTT 539 Query 115147 ATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGT 115206 | ||| ||||||||| |||| || | | || || || ||||||||||| || Sbjct 538 CATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGT 479 Query 115207 TGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACGGCG 115264 || | ||||| | | | | |||| |||||| | |||||| || | |||| Sbjct 478 AGGAGAGGCGTG--AGTAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGT 421 Query 115265 GGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCC 115324 || ||| || || || || | | ||| ||||| | ||||| || ||| | || Sbjct 420 TCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCG 361 Query 115325 ATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 115373 | | || || ||| || ||||||| ||||||||||||||| Sbjct 360 GCAATCTTGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 312 >seq90 Length=51520 Score = 111 bits (122), Expect = 2e-19 Identities = 303/460 (66%), Gaps = 18/460 (4%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| |||||||| |||||||| ||||| ||| ||| | ||| |||||||| Sbjct 4952 GTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCGCCCAGGGAGATGTTCTCCAT 5011 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCC-CAATCTGTTTGAG 125871 || ||||| ||||| || || | | | |||| || ||| | | Sbjct 5012 GAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGGGCAACC------AA 5065 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||| || || | |||| |||||||||||| |||| |||||||| |||| || Sbjct 5066 GAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCGAGCAG 5125 Query 125932 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGAT 125991 | ||| || || || || | |||| ||| ||||| | || || || | || Sbjct 5126 GGCACAAGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGACAGCGTCGACAATAAT 5185 Query 125992 GGCGTGAATGGTGTCCACCCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGC 126048 | | || || | | | || | | ||| | || | ||||| || ||| Sbjct 5186 GTCCTGGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTACAAGAGG--CA-GGC 5242 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || ||| |||||||||||||| ||||| || ||||| |||||| ||| || || Sbjct 5243 GAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGACCGGG 5302 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 ||||||||| |||||||| | |||||| || | ||| | || |||||| || || Sbjct 5303 CATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAAATACC 5362 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 ||| || ||||| |||| || |||| || |||||| Sbjct 5363 CTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGAG 5402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597290467191400