Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1955 127 2e-24 seq460 102 9e-17 >seq1955 Length=8910 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| || | ||| |||||| || || ||||| || | ||| || || || Sbjct 3778 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 3719 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| || || ||||||||||||| || | || ||||||| Sbjct 3718 TCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTG 3659 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || |||| | | | |||||| ||| ||||| |||| ||||| Sbjct 3658 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATA 3599 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||||||| || ||||| || ||||| ||||| Sbjct 3598 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 3564 >seq460 Length=27106 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| |||||||| ||| || || |||| || |||||||| ||||| || Sbjct 24810 CTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAGCTGCTTTCCAGCAAA 24751 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | | |||||| | | ||| | || | || | ||| Sbjct 24750 AATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTAT-CTTGAATCTTGGATTTAACGT 24692 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||| || || || |||| ||| || || ||||| || | ||||| | Sbjct 24691 TGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGA 24632 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 24631 CGAAGATTTGCAT 24619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543155389197200