Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq460 127 2e-24
seq1955 87.8 2e-12
>seq460
Length=27106
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
|||||| |||| | || || || |||| |||||| || || ||||||||||||||
Sbjct 24846 ACCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCT 24787
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| |||| || |||||||| || ||| ||||||| ||||||||||| |||||
Sbjct 24786 CAGGGTGCGACCGTCCTCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGG 24727
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| || || || || || | ||| || | || ||
Sbjct 24726 GATACCCTCCTTATCTTGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAAC 24667
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||||||||| || || ||||| ||||||||
Sbjct 24666 CTCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619
Score = 95.1 bits (104), Expect = 1e-14
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || | |||| || || || || || |||||||| || | || |||||| ||||
Sbjct 24375 AAGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 24316
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|||||||||||||| || | || || |||||||| ||||| || || || || || ||
Sbjct 24315 CTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTC 24256
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || || | |||||| || || || || | ||| | |||
Sbjct 24255 CTGGATCTTCGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGT 24196
Query 64411 CTTGCCGGT 64419
|||||||||
Sbjct 24195 CTTGCCGGT 24187
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| || || | ||||| || || ||||||||||| || | | ||||| | ||
Sbjct 24603 AAGCACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATC 24544
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| |||||||| ||||| |||| | |||||||| ||||||||||| || || || ||
Sbjct 24543 TTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTC 24484
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || || || || | || || | || || || | || | |||
Sbjct 24483 CTGGATCTTGGATTTGACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGT 24424
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| |||||||| || || || || || |||||
Sbjct 24423 CTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 24391
>seq1955
Length=8910
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||| || || | || || || || || |||||||| || |
Sbjct 3791 ACCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3732
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| |||| || |||||||| ||||| | || || |||||||||||||| ||
Sbjct 3731 CAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGG 3672
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || || || || || ||| ||| || | || || | |||||
Sbjct 3671 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCAC 3612
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||| || | || || ||||| || |||||
Sbjct 3611 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 3564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499591993790200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |