Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1012 147 2e-30 seq460 111 2e-19 seq1955 109 5e-19 >seq1012 Length=16087 Score = 147 bits (162), Expect = 2e-30 Identities = 953/1509 (63%), Gaps = 49/1509 (3%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || ||||||||||| || | || || | | ||| | ||| ||| | | Sbjct 1787 GGTTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGG 1728 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | || || ||||| | || |||| ||| | || ||||||||| ||| | Sbjct 1727 GCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGA 1668 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | | || ||| || || | |||||| ||| || | | ||||||| || | ||| ||| Sbjct 1667 CAAGCAGAGAGTTGCGGACACCGTGCTGCTTGA-TCTGCTCCTTCAGAGCATCCCAGTCC 1609 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || |||| || | | ||||||||||||||||| | | || || | || Sbjct 1608 CAGAGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGG 1549 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCG--A 153324 || | |||| |||| || || ||||| | ||| | | | | | | Sbjct 1548 GAACCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACT-GCACCGA-CATGGTAA 1491 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | || | | ||| || || ||| || | || ||||| | ||||| | || Sbjct 1490 GGGCAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACT 1431 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 | | |||||||| || || ||||| ||||| |||||||| | ||||| || |||| Sbjct 1430 CAAAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGG 1371 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT--ATGGGATAGTGATTGCGATCGAT 153502 | || || | ||||||| | || ||| || | || ||||| ||| ||||| Sbjct 1370 GGCGGTGGCGCATGTTGCTGTTGCGAGC-CTC-CTGGACCGGGTAGTGGTTGACGTCGAT 1313 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 |||| |||||||||| || || || || | || | | | | || |||| ||| || || Sbjct 1312 AATTCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA 1253 Query 153563 GGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGC 153622 | |||| | | ||| | || ||| | || ||||| ||||| || || Sbjct 1252 GACACCCTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGC 1193 Query 153623 CGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGA 153681 ||| || |||| ||| ||| | | |||||| | |||||||||| || || Sbjct 1192 GACCTCATCAGGCG-CGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAG 1134 Query 153682 CGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 153741 |||| || | ||| ||||| ||||| ||| || || ||| |||||||| | || Sbjct 1133 TACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGT 1074 Query 153742 CGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGC---AGGTCC----TGCGCT 153791 |||||||||| || | |||| || | ||| || || || || || Sbjct 1073 TGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTCT 1014 Query 153792 CGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCG 153851 || || |||| || || |||||| ||||||||| ||| ||||| Sbjct 1013 TGCGACCCTTGCCCAT-------CT---GCTCGTACTTCTCGTACAGGGTCTCGAACTCC 964 Query 153852 TCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCG 153911 || |||||||||||||| || || ||||||| | || ||||| || | ||| || Sbjct 963 TCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCG 904 Query 153912 TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 | | || | |||||| ||||| || | ||| || ||| | |||||||| Sbjct 903 TTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGG 844 Query 153972 GCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGG 154029 || | |||||| | ||||| | | || | |||| | | | ||| ||| | Sbjct 843 GCGCGGACCTCCTCCTTG-CCATGGTTC-TTGCGAAGATCCAAGAAGTCGAAGACGTCAG 786 Query 154030 CGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGA 154086 ||||||| || || | ||| | || | ||||| ||| || || || || |||| Sbjct 785 CGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGA 726 Query 154087 CGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGT 154146 ||| ||| | | || |||||||| || | |||||| | | ||| | | ||| |||| Sbjct 725 CGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGT 666 Query 154147 TGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGC 154206 |||| | || | |||| ||||| | | || || || | |||||||| | Sbjct 665 TGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCAC 606 Query 154207 CGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTAT 154266 || | || || || ||||||| || || |||||| || ||||| | Sbjct 605 CGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGT 546 Query 154267 CGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCG-AA 154325 | || | ||| | ||| || || ||| || | || | | | ||| || Sbjct 545 CCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTG-AGCCTGAGGGGTGCCGGCGTTG 487 Query 154326 AAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCT---CATCATGCGGTACGTTTCG 154382 ||||| || ||| ||||| ||||| | || ||| ||||| | ||| |||||| Sbjct 486 AAGAGCGTAGGAGAGGCGTGAGTAAAGAACTT---GCTCGACATCAGGTTGTAGGTTTCG 430 Query 154383 ATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGC 154442 ||| || ||| | |||||||| ||||| | ||||| ||||||| ||||||||| Sbjct 429 ATGACGCGTTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGA 370 Query 154443 GGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCAT-TTTCGAGGGTTTTGTA 154501 || | ||||| | | ||||| ||||| ||| || | || | || | ||| ||| | Sbjct 369 GGTCTCTCGGCAATCTTGCCGTCAAGCTTCAGGAGGTA-CGATCTCTCCAAGGTCTTGAA 311 Query 154502 ACCGAAATA 154510 ||||| || Sbjct 310 GCCGAAGTA 302 >seq460 Length=27106 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||| | || | || | | |||||||| ||||||||||| |||||| Sbjct 24845 CCGCCACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTC 24786 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || || | | | || |||||||| ||||| ||||| Sbjct 24785 AGGGTGCGACCGTCCTCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGG 24726 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | || | ||||| ||| || | ||||| | ||||| | Sbjct 24725 ATACCCTCCTTATC-TTGAATCTTGGATTTAACGTTG-TCGATTGTGTCCGATGACTCAA 24668 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | ||| || || |||| || || || || || ||||| Sbjct 24667 CCTCGAGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || ||| || || || || || || |||| Sbjct 24584 GACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCG 24525 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || | |||||| || || ||||| || || || ||||| ||| || ||| | Sbjct 24524 AAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTGACG 24465 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| || || ||||||| || | || || || |||| || || Sbjct 24464 TTGTCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTCTTTCCGGTCAAGGTCTTG 24405 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 24404 ACAAAGATCTGCAT 24391 >seq1955 Length=8910 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| | Sbjct 3790 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3731 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || |||| |||| || ||||| ||||| || || Sbjct 3730 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 3671 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | ||||| | | |||||||| ||||||||| Sbjct 3670 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGACGACTCCAC 3612 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || | || || || || || || || || || ||||||||| Sbjct 3611 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 3563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496209951267600