Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1012 161 9e-35 seq460 129 6e-25 seq1955 123 2e-23 seq395 87.8 2e-12 >seq1012 Length=16087 Score = 161 bits (178), Expect = 9e-35 Identities = 947/1488 (64%), Gaps = 72/1488 (5%) Strand=Plus/Minus Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097 || |||||| |||| | ||| | ||||||| |||||||||||||| || || || || Sbjct 1812 TCGACGAGGTCCTTCAAGAGCCAAGGGTTGACTACCTGAAACTCGCCAGCAAGGACACGG 1753 Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157 | | |||| | || |||| | |||||||| |||| ||||| || | ||||| | Sbjct 1752 CGCTGATAGATATTCGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAG 1693 Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAAT 146216 || | || || |||||| ||| || |||| |||||| | || ||||| | ||| || Sbjct 1692 GTGCTGGCAGTCGGCATGGGCGCGACAAGCAGAGAGTTGCGGACACCGTGCTGCTTG-AT 1634 Query 146217 CTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTC 146276 || ||| || ||| | ||| | |||||| ||| | | ||| | |||| Sbjct 1633 CTGCTCCTTCAGAGCATCCCAGTCCCAGA---GATCCGAGGGCTTAACATTCCACATGTC 1577 Query 146277 GTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCG 146334 ||| || | |||| | | |||||||| | |||||||| || || ||||| || Sbjct 1576 GTACTGGAGGATGCCCTGAGAAACAGGGG--AACCCTCGTACGTCTCGTAGGGACCCTCC 1519 Query 146335 ATCTTGGCCAGTTCGCAGCTAGCT-TCCAGAGCCGAAAAGTATATGGTCTCCGCGATCAT 146393 | |||||| | ||| | | | || || | ||| || ||||| ||| | Sbjct 1518 TCCCTGGCCAACT-GCACCGACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAATATCTT 1460 Query 146394 GTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTC 146453 | ||||| | | || || | || |||| || |||| || ||||| || Sbjct 1459 CTTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGGCATGCGGAGAGCCAAGAAGGCATC 1400 Query 146454 GGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCAGCGC 146512 ||| |||||||| | |||| ||||| ||||||||| | |||| ||||| || | | Sbjct 1399 GGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTC 1340 Query 146513 CCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTT--- 146569 | | | ||| ||||||||| |||||| || ||||||| ||||| || || | | Sbjct 1339 CTGGACCGGG-TAGTGGTTGACGTCGATAATTCTGTTGAGGTTACGAACAACGACCTGGG 1281 Query 146570 -----TCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCA 146624 |||| | | ||| | | | | ||| || | ||| || || ||| | Sbjct 1280 TGACCTCGTGGA--GCTTCTGGAAGTCGTAGACA----CCCTCGTTGTA--GTCAACGAA 1229 Query 146625 CTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTG 146684 || | ||||| ||||||| ||||||||| || ||| || |||| || | Sbjct 1228 GGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTCATCAGGCGCGCAGTATTC 1169 Query 146685 CACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAA 146744 | ||||| | |||||||||| || ||| | |||| || || ||||| || Sbjct 1168 GATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTACCCAGGTTCTTCTGGTTGCT--- 1112 Query 146745 CTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTC 146801 ||| |||| | ||||||||||||||| | || ||||| ||| | | ||| Sbjct 1111 CTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTC 1052 Query 146802 GACGATGAATCTAAACAAATCTCT--GGCCTTTACTTGTCTTTCGTACAGTT--TATTCT 146857 || ||| | | || | || | |||||| | | ||||| || || || ||| Sbjct 1051 GAGAATG--GCATACCAGAGCTTTTGGGCCTTGA-TGGTCTTGCG-ACCCTTGCCCATCT 996 Query 146858 TTTCGTATTTCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGAT 146917 ||||| |||||||||| | || || ||||| |||| || || ||| Sbjct 995 GCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGAC 936 Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAAT 146977 ||| ||||| || | || | ||| ||| |||| || ||| | | ||| || | || Sbjct 935 ACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGAT 876 Query 146978 CGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGC 147037 |||| |||||||| | || | | |||||| || | | ||||| | ||||| | | Sbjct 875 CGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTG-CCATGGTTC 817 Query 147038 GTCTCAAG-TTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGT 147096 | ||| | | || ||| | | || | ||||||||||| | ||| || | Sbjct 816 TTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAA 757 Query 147097 GCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGT 147153 || || ||| || || || || ||||||| ||| | ||||||||||||| || Sbjct 756 GCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGG 697 Query 147154 AACATGGACACGAGGCCGCCGGATTT---TGTGGTGC---CGTTGTA------TTGAGCG 147201 | ||||| |||| ||| || | |||||| | |||| |||| Sbjct 696 AGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCG 637 Query 147202 CTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA-CTC 147260 | || || || || | || || | || ||| ||| || || |||| |||| | || Sbjct 636 CGGATGCGGTGGACATTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTC 577 Query 147261 GTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTG--CAGGAAACAC 147318 || | ||| | |||||| || ||||| ||| ||||| || || | ||||| || Sbjct 576 TTG-AGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCAT--ATCGACAAGGAAGCAA 520 Query 147319 GAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGT---G 147375 || ||| || | || ||||| || || ||||| || |||||| || | Sbjct 519 GAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAG 460 Query 147376 AACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGA 147435 ||| ||| | || ||||| | || ||||| ||| ||| |||||||||||| Sbjct 459 AACTTGCTC-GA--CATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAG 403 Query 147436 ATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATC 147483 ||| ||| ||||| ||||||| ||||||||| |||| || |||||| Sbjct 402 ATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCGGCAATC 355 >seq460 Length=27106 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| || |||||| ||| || ||||| ||||| Sbjct 24587 GTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTCCAGCTGCTTTCCG 24528 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| ||||||||||||||||| ||||||||||||||| ||| || ||| Sbjct 24527 GCGAAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTG 24468 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||| | ||||| |||| || | || || ||||||| || Sbjct 24467 ACGTTG-TCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTCTTTCCGGTCAAGGT 24409 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 24408 CTTGACAAAGATCTGCAT 24391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 24389 CCACCACGGAGACGAAGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 24330 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| |||| | |||||||||||||| || Sbjct 24329 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGG 24270 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| ||| | |||| |||| ||| || | |||||| Sbjct 24269 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTG-TCGATGGTATCAGAGGACTCGAC 24211 Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089 |||| || | || |||||||| Sbjct 24210 CTCGAGAGTGATGGTCTTGCCGGT 24187 >seq1955 Length=8910 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 3790 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3731 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| || Sbjct 3730 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 3671 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||||| | |||| |||||| | ||| || Sbjct 3670 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3611 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| ||| | || ||||| || || || || || || ||||||||| Sbjct 3610 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 3563 >seq395 Length=29552 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || || ||| ||||||| |||||||| || || || ||||||||||| Sbjct 1152 ATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 1093 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| ||||||| |||||| || | ||| | Sbjct 1092 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 1033 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || || || ||||| || || || ||| Sbjct 1032 GGTCTTACCCGTCAGGGTCTTCACGAAA 1005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475450545509200