Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 161 9e-35
seq460 129 6e-25
seq1955 123 2e-23
seq395 87.8 2e-12
>seq1012
Length=16087
Score = 161 bits (178), Expect = 9e-35
Identities = 947/1488 (64%), Gaps = 72/1488 (5%)
Strand=Plus/Minus
Query 146038 TCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGC 146097
|| |||||| |||| | ||| | ||||||| |||||||||||||| || || || ||
Sbjct 1812 TCGACGAGGTCCTTCAAGAGCCAAGGGTTGACTACCTGAAACTCGCCAGCAAGGACACGG 1753
Query 146098 CTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCC 146157
| | |||| | || |||| | |||||||| |||| ||||| || | ||||| |
Sbjct 1752 CGCTGATAGATATTCGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAG 1693
Query 146158 GTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG-TCTTTGAAT 146216
|| | || || |||||| ||| || |||| |||||| | || ||||| | ||| ||
Sbjct 1692 GTGCTGGCAGTCGGCATGGGCGCGACAAGCAGAGAGTTGCGGACACCGTGCTGCTTG-AT 1634
Query 146217 CTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTC 146276
|| ||| || ||| | ||| | |||||| ||| | | ||| | ||||
Sbjct 1633 CTGCTCCTTCAGAGCATCCCAGTCCCAGA---GATCCGAGGGCTTAACATTCCACATGTC 1577
Query 146277 GTAATGCATAGTGCC--GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCG 146334
||| || | |||| | | |||||||| | |||||||| || || ||||| ||
Sbjct 1576 GTACTGGAGGATGCCCTGAGAAACAGGGG--AACCCTCGTACGTCTCGTAGGGACCCTCC 1519
Query 146335 ATCTTGGCCAGTTCGCAGCTAGCT-TCCAGAGCCGAAAAGTATATGGTCTCCGCGATCAT 146393
| |||||| | ||| | | | || || | ||| || ||||| ||| |
Sbjct 1518 TCCCTGGCCAACT-GCACCGACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAATATCTT 1460
Query 146394 GTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAAAGGCGTC 146453
| ||||| | | || || | || |||| || |||| || ||||| ||
Sbjct 1459 CTTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGGCATGCGGAGAGCCAAGAAGGCATC 1400
Query 146454 GGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT-CGCAGCGC 146512
||| |||||||| | |||| ||||| ||||||||| | |||| ||||| || | |
Sbjct 1399 GGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGCCTC 1340
Query 146513 CCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTT--- 146569
| | | ||| ||||||||| |||||| || ||||||| ||||| || || | |
Sbjct 1339 CTGGACCGGG-TAGTGGTTGACGTCGATAATTCTGTTGAGGTTACGAACAACGACCTGGG 1281
Query 146570 -----TCGTCAAACGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCA 146624
|||| | | ||| | | | | ||| || | ||| || || ||| |
Sbjct 1280 TGACCTCGTGGA--GCTTCTGGAAGTCGTAGACA----CCCTCGTTGTA--GTCAACGAA 1229
Query 146625 CTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTG 146684
|| | ||||| ||||||| ||||||||| || ||| || |||| || |
Sbjct 1228 GGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTCATCAGGCGCGCAGTATTC 1169
Query 146685 CACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAA 146744
| ||||| | |||||||||| || ||| | |||| || || ||||| ||
Sbjct 1168 GATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTACCCAGGTTCTTCTGGTTGCT--- 1112
Query 146745 CTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTC 146801
||| |||| | ||||||||||||||| | || ||||| ||| | | |||
Sbjct 1111 CTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTC 1052
Query 146802 GACGATGAATCTAAACAAATCTCT--GGCCTTTACTTGTCTTTCGTACAGTT--TATTCT 146857
|| ||| | | || | || | |||||| | | ||||| || || || |||
Sbjct 1051 GAGAATG--GCATACCAGAGCTTTTGGGCCTTGA-TGGTCTTGCG-ACCCTTGCCCATCT 996
Query 146858 TTTCGTATTTCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAGGAGGCCGGGAT 146917
||||| |||||||||| | || || ||||| |||| || || |||
Sbjct 995 GCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGAC 936
Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAAT 146977
||| ||||| || | || | ||| ||| |||| || ||| | | ||| || | ||
Sbjct 935 ACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGAT 876
Query 146978 CGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTGC 147037
|||| |||||||| | || | | |||||| || | | ||||| | ||||| | |
Sbjct 875 CGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTG-CCATGGTTC 817
Query 147038 GTCTCAAG-TTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGT 147096
| ||| | | || ||| | | || | ||||||||||| | ||| || |
Sbjct 816 TTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAA 757
Query 147097 GCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGT 147153
|| || ||| || || || || ||||||| ||| | ||||||||||||| ||
Sbjct 756 GCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGG 697
Query 147154 AACATGGACACGAGGCCGCCGGATTT---TGTGGTGC---CGTTGTA------TTGAGCG 147201
| ||||| |||| ||| || | |||||| | |||| ||||
Sbjct 696 AGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCG 637
Query 147202 CTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGA-CTC 147260
| || || || || | || || | || ||| ||| || || |||| |||| | ||
Sbjct 636 CGGATGCGGTGGACATTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTC 577
Query 147261 GTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTG--CAGGAAACAC 147318
|| | ||| | |||||| || ||||| ||| ||||| || || | ||||| ||
Sbjct 576 TTG-AGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCAT--ATCGACAAGGAAGCAA 520
Query 147319 GAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGT---G 147375
|| ||| || | || ||||| || || ||||| || |||||| || |
Sbjct 519 GAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAG 460
Query 147376 AACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGA 147435
||| ||| | || ||||| | || ||||| ||| ||| ||||||||||||
Sbjct 459 AACTTGCTC-GA--CATCAGGTTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAG 403
Query 147436 ATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATC 147483
||| ||| ||||| ||||||| ||||||||| |||| || ||||||
Sbjct 402 ATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCGGCAATC 355
>seq460
Length=27106
Score = 129 bits (142), Expect = 6e-25
Identities = 149/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| || |||||| ||| || ||||| |||||
Sbjct 24587 GTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTCCAGCTGCTTTCCG 24528
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | ||||| ||||||||||||||||| ||||||||||||||| ||| || |||
Sbjct 24527 GCGAAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTG 24468
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| || | |||||| | ||||| |||| || | || || ||||||| ||
Sbjct 24467 ACGTTG-TCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTCTTTCCGGTCAAGGT 24409
Query 127096 TTTTACAAAAATCTGCAT 127113
|| ||||| ||||||||
Sbjct 24408 CTTGACAAAGATCTGCAT 24391
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| |||
Sbjct 24389 CCACCACGGAGACGAAGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 24330
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| || |||||| |||| | |||||||||||||| ||
Sbjct 24329 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGG 24270
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| ||| ||| | |||| |||| ||| || | ||||||
Sbjct 24269 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTG-TCGATGGTATCAGAGGACTCGAC 24211
Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089
|||| || | || ||||||||
Sbjct 24210 CTCGAGAGTGATGGTCTTGCCGGT 24187
>seq1955
Length=8910
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | || ||||| || || || ||||| ||| |
Sbjct 3790 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 3731
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| || || ||||| ||||| ||| |||||| |||||||| ||||| ||
Sbjct 3730 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 3671
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| || ||||| | |||| |||||| | ||| ||
Sbjct 3670 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACC 3611
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|||| ||| | || ||||| || || || || || || |||||||||
Sbjct 3610 TCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 3563
>seq395
Length=29552
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || || ||| ||||||| |||||||| || || || |||||||||||
Sbjct 1152 ATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 1093
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | |||| ||||||| |||||| || | ||| |
Sbjct 1092 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTAAT 1033
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| || || ||||| || || || |||
Sbjct 1032 GGTCTTACCCGTCAGGGTCTTCACGAAA 1005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475450545509200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |