Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq460 102 7e-17
seq1012 87.8 2e-12
>seq460
Length=27106
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || ||||| || ||||| || || || |||||||| | ||| | || |||
Sbjct 24827 ACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCCTCC 24768
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || ||||| || | || | || |||||||| || || || || || |||||||||
Sbjct 24767 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGA 24708
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
| | || | || | || | || | ||||| || ||||| || ||||| |||| ||| ||
Sbjct 24707 A-TCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTCTT 24649
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| | || || || || ||||||||
Sbjct 24648 GCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619
>seq1012
Length=16087
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 124107 CAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAA 124166
||||||||||||||||||| || || | || | ||||||||| | | | || |
Sbjct 1571 CAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGACTGGGATGCTCTGAAGGA- 1629
Query 124167 CGCATATC--GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAA 124224
||| ||| | ||||||| | || ||||| ||| | || ||| ||||||||| || |
Sbjct 1630 -GCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTTGTCGCGCCCATGCCGACTGCCA 1688
Query 124225 CCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACG 124284
||| |||| || || || ||||| || | ||||||||| | ||| ||| | ||
Sbjct 1689 GCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTACACCTCGAATATCTATC 1748
Query 124285 TGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315
||| || || | || ||||| ||||| ||
Sbjct 1749 AGCGCCGTGTCCTTGCTGGCGAGTTTCAGGT 1779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451955428911800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |