Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq460 102 7e-17 seq1012 87.8 2e-12 >seq460 Length=27106 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || ||||| || ||||| || || || |||||||| | ||| | || ||| Sbjct 24827 ACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCCTCC 24768 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | || | || |||||||| || || || || || ||||||||| Sbjct 24767 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGA 24708 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | | || | || | || | || | ||||| || ||||| || ||||| |||| ||| || Sbjct 24707 A-TCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTCTT 24649 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | || || || || |||||||| Sbjct 24648 GCCGGTCAAGGTCTTGACGAAGATTTGCAT 24619 >seq1012 Length=16087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 124107 CAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAA 124166 ||||||||||||||||||| || || | || | ||||||||| | | | || | Sbjct 1571 CAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGACTGGGATGCTCTGAAGGA- 1629 Query 124167 CGCATATC--GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAA 124224 ||| ||| | ||||||| | || ||||| ||| | || ||| ||||||||| || | Sbjct 1630 -GCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTTGTCGCGCCCATGCCGACTGCCA 1688 Query 124225 CCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACG 124284 ||| |||| || || || ||||| || | ||||||||| | ||| ||| | || Sbjct 1689 GCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTACACCTCGAATATCTATC 1748 Query 124285 TGCGACGAGTGTTAGCCGGCGATTTTCAAGT 124315 ||| || || | || ||||| ||||| || Sbjct 1749 AGCGCCGTGTCCTTGCTGGCGAGTTTCAGGT 1779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451955428911800