Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1012 161 1e-34 seq90 129 7e-25 >seq1012 Length=16087 Score = 161 bits (178), Expect = 1e-34 Identities = 935/1487 (63%), Gaps = 29/1487 (2%) Strand=Plus/Minus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 ||||| || |||||| || || ||| || | | ||||||| || | ||||| ||| Sbjct 1785 TTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGC 1726 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||||||||| |||||||| || | ||| ||| || |||||||| || | Sbjct 1725 TCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACA 1666 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAG 116043 || || |||||||| ||| | | | || | ||||| || || |||||||| || Sbjct 1665 AGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAG 1606 Query 116044 TTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGAT 116103 | | || | | |||||| || |||||||||| || || || | || || Sbjct 1605 AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAA 1546 Query 116104 CCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCG--AGGG 116161 ||||| | ||||| || || ||||| || ||||| | | | | | | |||| Sbjct 1545 CCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAA--CTGCACCGACATGGTAAGGG 1488 Query 116162 CTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAA 116221 | ||||| || |||||||| || || || | | || ||| ||| |||| Sbjct 1487 CAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAA 1428 Query 116222 ACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGC 116281 | | | ||| | || |||| || ||||| || |||||||| ||||| |||| Sbjct 1427 AGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGC 1368 Query 116282 GATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCC 116341 | || | ||| || || ||||| || || || || || ||||||| | Sbjct 1367 GGTGGCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTC 1308 Query 116342 TATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGC 116401 | || || || || |||| |||| || || ||||| | | | || | | Sbjct 1307 TGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GA 1251 Query 116402 GAGTCTCTTCATTG---ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGG 116458 | ||| | | | || | | || ||||||| || ||||| ||||| |||| | Sbjct 1250 CACCCTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGA 1191 Query 116459 TCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGC 116518 |||||| | ||| || || || || || || | || || || || || | Sbjct 1190 CCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTAC 1131 Query 116519 CCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCC 116578 ||| |||||| || || ||| ||| ||||||||||||||||| | || | | Sbjct 1130 CCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGC 1071 Query 116579 CCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCG 116637 | ||||| || || | || |||||| || | ||| | | | | | || | ||| Sbjct 1070 CGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTG----ATGGTC 1015 Query 116638 TTG----GCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCAC 116693 ||| || |||| | || ||||||||| ||| |||| ||| ||||| || ||| Sbjct 1014 TTGCGACCCTTGCCCAT-CTGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTC-CCCGT 957 Query 116694 AGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCT 116752 ||| || | || || || || | || || | ||||| ||| | || || || Sbjct 956 AGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCT 897 Query 116753 CAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAG 116812 | || | |||||||||||| || |||||||| || || ||| || || || ||| Sbjct 896 CCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGA 837 Query 116813 CTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACG 116872 | || || | || || || || | ||||| ||||| | || || |||||||| | Sbjct 836 CCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAG 777 Query 116873 GTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCG 116929 | || ||||| | || | | || ||| ||| | |||| || || | | Sbjct 776 GCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCACCTTGGTCGACGTAGCGAG 717 Query 116930 CCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCC 116989 | || || || || || ||||| |||| || ||| | ||| || || || || Sbjct 716 CAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAG 657 Query 116990 GAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACT 117049 ||| ||| | | || | || ||||| | | |||||| || || ||| | Sbjct 656 CAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCATTT 597 Query 117050 TTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTAT 117109 | ||||| ||||| | |||| || ||||||| || ||||| ||||| |||| Sbjct 596 TGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCA 537 Query 117110 TTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTG 117169 | ||| |||||||| |||| || | | || || || ||||||||||| || | Sbjct 536 TATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAG 477 Query 117170 GTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGG 117227 | | ||||| | | | | |||| |||||| | |||||| || | ||| Sbjct 476 GAGAGGCGTG--AGTAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTC 419 Query 117228 AATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCAT 117287 || ||| || || || || | | ||| ||||| | ||||| || ||| | || Sbjct 418 AACGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGAGGTCTCTCGGC 359 Query 117288 CAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 117334 | | || || ||| || ||||||| ||||||||||||||| Sbjct 358 AATCTTGCCGTCAAGCTTCAGGAGGTACGATCTCTCCAAGGTCTTGA 312 >seq90 Length=51520 Score = 129 bits (142), Expect = 7e-25 Identities = 336/507 (66%), Gaps = 24/507 (5%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || |||||||| |||||||| ||||| || | ||| ||| |||||||| Sbjct 4952 GTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCGCCCAGGGAGATGTTCTCCAT 5011 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCC-CAATCTGTTTGAG 127344 || ||||| ||||| || || | | | |||| || ||| | | Sbjct 5012 GAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCCAAGGGCAACC------AA 5065 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||| || || | |||| |||||||||||| |||| |||||||| |||| || Sbjct 5066 GAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCGAGCAG 5125 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | ||| || || || || | |||| ||| ||||| | ||||| || | || Sbjct 5126 GGCACAAGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGACAGCGTCGACAATAAT 5185 Query 127465 GGCGTGAATAGTGTCCACCCCAGGTC---TATTGCGTAAAGTCTTGAAGAGTTCCACAGC 127521 | | || ||| | | | || | | ||| | || | ||||| || || Sbjct 5186 GTCCTGGATAACCTGCTTGCTGGGGCGGTTCTTGAGGTGAGAGTACAAGAGG--CAG-GC 5242 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 || || ||| |||||||||||||| ||||| || ||||| |||||| |||||| || Sbjct 5243 GAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGACCGGG 5302 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||||||||| |||||||| | |||||| || | ||| | |||| |||||| || || Sbjct 5303 CATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAAATACC 5362 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATC---AAA 127698 ||| || ||||| |||| || |||| ||| ||||| |||||| ||| || Sbjct 5363 CTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGA---GGACTTCTCATCGCTAAT 5419 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTT 127725 |||||| | ||||| | ||||| || Sbjct 5420 CCACTTGAGAGCCCAGTCGGCCTTCTT 5446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613442359957800