Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq460 147 5e-30 seq1955 127 5e-24 seq1012 86.0 1e-11 seq395 86.0 1e-11 >seq460 Length=27106 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||||||||||||||| || | ||||||||| | |||||| | |||||| Sbjct 24602 AGCACAAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCT 24543 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||||||||||||||| || | ||||||||| || ||| ||| || || ||| Sbjct 24542 TCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCC 24483 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| || | |||||| | || ||| || || | ||||| ||| Sbjct 24482 TGGATCTTGGATTTGACGTTGTCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTC 24423 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| || || Sbjct 24422 TTTCCGGTCAAGGTCTTGACAAAGATCTG 24394 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||||||||||| || | |||||| || || || | || || Sbjct 24830 AGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATCGCTCAGGGTGCGACCGTCC 24771 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||||||||| || || ||||||||||||||||| ||| || || || || Sbjct 24770 TCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 24711 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || ||| |||| ||||| | || || || || | ||| |||||| Sbjct 24710 TGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAACCTCGAGCGTAATCGTC 24651 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || ||||| Sbjct 24650 TTGCCGGTCAAGGTCTTGACGAAGATTTG 24622 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | | || | || || Sbjct 24374 AGNACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 24315 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| ||||||||||| || || || || || ||| Sbjct 24314 TCAAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGGGGGATACCCTCCTTGTCC 24255 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||| || | | || || || | ||||| ||| Sbjct 24254 TGGATCTTCGACTTCACGTTGTCGATGGTATCAGAGGACTCGACCTCGAGAGTGATGGTC 24195 Query 199598 TTACCCGTGA 199607 || || |||| Sbjct 24194 TTGCCGGTGA 24185 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || ||||||||||||||| |||||||||| | |||||| |||| |||||| | ||||| Sbjct 24520 ATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAACATTCAGAAG 24579 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| |||||||| Sbjct 24580 GAGTCGACTCTCCACCTTGT 24599 >seq1955 Length=8910 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| | || || Sbjct 3784 CGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 3725 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||||||||||||||| || ||||||||||| || || || Sbjct 3724 CGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCC 3665 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 3664 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGG 3605 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| || ||||| || || || Sbjct 3604 GTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTG 3567 >seq1012 Length=16087 Score = 86.0 bits (94), Expect = 1e-11 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 167740 GTGCTTTTGGTTATTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACCAAC 167799 || ||| ||||| | |||||| || |||||||||| |||||||| | || Sbjct 1126 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGT 1067 Query 167800 CTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT-CG 167858 ||| | |||||| | | |||| | ||| || | |||||| || | ||| | | | Sbjct 1066 CTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTCTTGCGACC 1007 Query 167859 CTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGT 167918 || || ||| | |||| |||| || ||| ||||| |||| |||||| ||| Sbjct 1006 CTTGCCCATCTGCT-CGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGG 948 Query 167919 CAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCTCT 167978 ||||||| ||| || || || || | |||| |||| | ||| | |||| || |||| Sbjct 947 CAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCT 888 Query 167979 TCATGAAGAGGTCGGAAGTCCAAA 168002 |||||||||| |||| |||||| Sbjct 887 TCATGAAGAGATCGGGGATCCAAA 864 >seq395 Length=29552 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| |||||||||| Sbjct 1186 CCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 1127 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||||||||||| || || || || ||||| ||||| ||| || | Sbjct 1126 TCAAGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 1067 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | || || ||||||||||| || || ||||| | Sbjct 1066 CGATCGTGTCCGAGGACTCGACCTCAAGGGTAATGGTCTTACCCGTCAGGGTCTTCACGA 1007 Query 199620 AA 199621 || Sbjct 1006 AA 1005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178793887791485