Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq90 149 6e-31 seq1955 136 4e-27 seq460 120 3e-22 seq395 93.3 4e-14 >seq90 Length=51520 Score = 149 bits (164), Expect = 6e-31 Identities = 199/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| ||| || | || ||||| | ||||||||| ||| || || Sbjct 5569 GTAGGTGTCAATGAGCAACGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAA 5628 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || ||||| || |||||| |||||| || || ||| |||||||||| || Sbjct 5629 GCCATAGAAGCAACGGGCCTCGGGCACCTGAACCTCGCCGCTGAAGCGCTCGACCAAGTT 5688 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 || ||||||||||||||| |||||||| ||||| || | |||| |||||| | Sbjct 5689 CTCATTGACGATGCCGTCGGAAGCGGCGAAGAAGGCGAGAATGTGCGAGATGAAGTACTT 5748 Query 133347 CTCGTTGTCGT---TCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | |||| || | | ||||||| || |||||| |||| || | |||||| Sbjct 5749 CTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGCAGGTCCTTAGACAAATCAATCTCCTC 5808 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| || |||||||| Sbjct 5809 TGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACAT 5844 Score = 118 bits (130), Expect = 1e-21 Identities = 343/519 (66%), Gaps = 18/519 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||||| || ||| | || |||||||| || || || ||||| | Sbjct 4934 CATGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCGCC 4993 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || ||| ||| | ||| || || |||||||||| | |||||| |||| | | Sbjct 4994 CAGGGAGATGTTCTCCATGAAGTCAAAGGGGTTGGAAGACTTGTAGACCTTGTCGTTGCC 5053 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT--GGTTTCGCAA 132768 ||| | || | || | |||||| |||||||| ||||| ||| ||| || | | | Sbjct 5054 AAGGGCAACCAAGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGCT--GGAG 5111 Query 132769 TTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 || | || ||||| |||| || || || || || || || || || || ||| Sbjct 5112 TTCATGCCGAGCAGG-GCACAAGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGAC 5170 Query 132828 CGCGTCGGTGACGATTTCCC---TAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT 132884 |||||| | || ||| |||| || ||| || || | | | || Sbjct 5171 AGCGTCGACAATAATGTCCTGGATAACCTGCTT---GCTGGGGCGGTTCTTGAGGTGAGA 5227 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 | ||| | ||| || |||||| |||| |||||||| | || || || || ||| Sbjct 5228 GTACAAGAGGCAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGA 5287 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| |||| ||||||||||| || || || |||||||| || || | ||| || ||| Sbjct 5288 GAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCC 5347 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG-CTT 133063 ||||| | ||||||||||| ||||| || |||||||||| | |||| | || ||| Sbjct 5348 ACTGAAGAAAATACCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGAGGACTT 5407 Query 133064 CT--TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || | ||| ||||| || ||||| |||||||| Sbjct 5408 CTCATCGCT---AATCCACTTGAGAGCCCAGTCGGCCTT 5443 >seq1955 Length=8910 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| |||| || ||| | || Sbjct 3564 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 3623 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| ||||||| Sbjct 3624 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 3683 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| |||||||| |||||||||| Sbjct 3684 CAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 3743 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||||||||| Sbjct 3744 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCG 3778 >seq460 Length=27106 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| |||||||| |||| |||||| || | || | | | | |||| | || Sbjct 24185 TCACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCTGATACCATCGACAACG-TGAAG 24243 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 || |||| ||||| ||||| || ||| |||| || ||||| || || | ||| ||| Sbjct 24244 TCGAAGATCCAGGACAAGGAGGGTATCCCCCCCGATCAGCAGCGTCTTATCTTCGCTGGC 24303 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || ||||| || |||| ||||||||| ||||||||||||||| ||||| | || || Sbjct 24304 AAGCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTT 24363 Query 38445 CATTTGGTGCTGCGT 38459 || ||||| || ||| Sbjct 24364 CACTTGGTNCTTCGT 24378 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || |||||||| |||| ||||| | || Sbjct 24391 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACACTCGAGGTCGAATCATCC 24450 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | ||| || |||| ||||| ||||| ||||| |||| || Sbjct 24451 GACACCATTGACAACG-TCAAATCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGATCA 24509 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| ||| || || |||||||| || | ||||| | ||||||||| Sbjct 24510 GCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAAGATGGTCGCACTTTGTCCGACTACAA 24569 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| |||| || || | ||||| ||| Sbjct 24570 CATTCAGAAGGAGTCGACTCTCCACCTTGTGCTTCGT 24606 >seq395 Length=29552 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||| ||| | || |||||| || | |||| | Sbjct 1006 TTCGTGAAGACCCTGACGGGTAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 1065 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 1066 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 1125 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 1126 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAACATCCAGAAG 1185 Query 38433 G 38433 | Sbjct 1186 G 1186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500119937987200