Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq990 331 1e-85 seq23 143 3e-29 seq43 93.3 5e-14 >seq990 Length=16340 Score = 331 bits (366), Expect = 1e-85 Identities = 928/1421 (65%), Gaps = 24/1421 (2%) Strand=Plus/Minus Query 6611 TCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTA 6670 || ||||| || || || | | ||||| || || || || |||||| | ||| || Sbjct 15016 TCGATGTCCTCCTTGGAGAGACGGCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTG 14957 Query 6671 CCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTT 6730 || | | |||| || | ||| || |||| ||||| || ||||||| |||||| | Sbjct 14956 CCAGTGCCCTTCTCAACGGCAGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTG 14897 Query 6731 ACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCA 6790 || | ||| || || ||| | || |||| ||||| || || | || || | || Sbjct 14896 ACCTCAATCTGGGGAACACCGCGGGGAGCGGGGGGAATGCCGGTAAGCTCGAACTTGCCG 14837 Query 6791 AGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCA 6850 || | |||| ||| | | || || ||||| || ||||| | || || || Sbjct 14836 AGAAGGTTGTTGTCCTTGGTGCGCTGGCGCTCACCCTCGTAGACCTGGATGAGGACACCA 14777 Query 6851 GGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTT 6910 || || || || || ||||||| | ||||| | || || || || || Sbjct 14776 GGCTGGTTGTCGGAGAAGGTGGAGAAGACCTCAGACTTCTTGGTGGGGATGGTGGTGTTG 14717 Query 6911 CTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTC 6970 | ||||| | | |||||| || ||||| || |||| || ||||| || || | Sbjct 14716 CGGGGAATGAGCTTGGTCATCATGCCACCAGCGGTCTCGATACCGAGAGAGAGGGGAGCG 14657 Query 6971 ACGTCCAAGAGTAACA----------GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAA 7020 || || | || || | | ||||| | ||| || |||| | | Sbjct 14656 ACATCGAGAAGCAAGATCTCGTTGGTGCTCTTGGA-AGAGGTGT------CACCAGACAG 14604 Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 |||||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 14603 AATGGCGGCCTGGACAGCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTT 14544 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 | || || ||||| || || || || | | | || || ||||| || || || Sbjct 14543 GGGCTCCTTGCCGTTGAAGTAGTCGGAGATAAGCTTCTGGATGCGGGGGATACGGGTGGA 14484 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 || ||||||| ||||| || | || | || || |||||||| | ||| || Sbjct 14483 ACCTCCGACCAGTACGATCTCGTGGACCTGGGACTTGTCGATCTTGGCGTCGGTGAGGAC 14424 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 ||||| || | || ||||||| ||| || || ||||| || || || Sbjct 14423 ACGGTCGACGGGCTGGATGGTGGAGCGGAACAGATCCTGGCAAAGCTCCTCGAAGCGGGC 14364 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 |||||| ||||| || ||||| |||| || ||||| | ||| || || || || | || Sbjct 14363 ACGGGTGATGGAGGTGTAGAAGTCAATACCCTCGTAGAGCGAGTCGATCTCGATAGAGGT 14304 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 || || | ||| || | || ||||| || ||||| || || || || | ||| || || Sbjct 14303 CTGGGCGGACGAGGACAGGGTGCGCTTGGCACGCTCGCAAGCGGTGCGGAGACGGCGCAG 14244 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG 7440 || || | ||| ||| | || ||||| || || || || ||||| | |||||| Sbjct 14243 AGCGCGGGCGTTGGTGGACAGGTCCTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTG 14184 Query 7441 TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 | ||| | |||||| || |||||||||||||| || || || ||||| | || Sbjct 14183 GTTGACGAGACGGTTATCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTGGACTT 14124 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| || ||||| || | |||||| | | | || ||||| || ||||||||||| || Sbjct 14123 GACCTCGAAGATGCCCTCCTCAATGGTCAGAAGGGACACATCGAAGGTACCACCACCAAG 14064 Query 7561 GTCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAG 7619 || || ||||| ||||| ||| || | || ||||| || |||||||| ||||| | Sbjct 14063 ATCGAAGATGAGAACGTTGCGT-TCACCTTCGGCCTTCTTGTCAAGACCGTAGGCGATGG 14005 Query 7620 CCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCAT 7679 | ||||| || || || || || || ||||| ||| ||||| |||||| | || | Sbjct 14004 CAGCCGCAGTGGGCTCGTTGATGATGCGAAGGACGTTGAGGCCGGCAATAAGACCGGCGT 13945 Query 7680 CTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCG 7739 | || ||||| || || || || ||||| |||||||| ||||| || || || |||| Sbjct 13944 CCTTGGTCGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACAACAGCGTTGT 13885 Query 7740 TGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATG 7799 |||| | ||| | | || || ||| | || ||| ||||| |||||||| | | Sbjct 13884 TGACCTGGCCACCCAAGAAAGACTCAGCGGTCTCACGCATCTTGGTGAGAACCATGGCAG 13825 Query 7800 AAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTT 7859 | ||||| || | | || || || ||||| || || || || | ||| || | Sbjct 13824 AGATCTCCTCGGGAGTGAAGGTCTTGGTCTCACCCTTGAACTCGACCTGAATGGCAGGCT 13765 Query 7860 TATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGT 7918 | || | | | || |||||| ||| | | |||||||| | || |||| Sbjct 13764 T----GCCGTTCTTGTCGACAACCTTGAACGGGAAGTGCTTCATATCAGCCTGCACCTCG 13709 Query 7919 TGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTC 7978 ||| ||||| | ||| || |||||||| || || || || ||||| | ||||||| Sbjct 13708 GAGTCGTTGAACTTGCGTCCAATGAGACGCTTGGCGTCGAAGACGGTGTTGTGGGGGTTC 13649 Query 7979 ATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 || || |||||||| ||||| || ||||| ||||| || Sbjct 13648 ATTGCGACCTGGTTCTTGGCCGCATCTCCGATCAGACGCTC 13608 >seq23 Length=74340 Score = 143 bits (158), Expect = 3e-29 Identities = 347/517 (67%), Gaps = 15/517 (3%) Strand=Plus/Plus Query 7247 TCCTCAAAACGTGCACGGGTAA--TGGATG-TATAGAAATCAACGCCGTCGTATAACGAA 7303 ||||| ||||| |||||||| | || || | ||| ||| || ||| | | || Sbjct 19514 TCCTCGAAACGGGCACGGGTGAGCTGAGTGGTGTAGTCCTCA---CCATCGAAGAGAGAG 19570 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| || || || || | ||| | || ||||| |||||||| || | Sbjct 19571 TCGATCTCAATGGTGGTCTGGGCACCGCTGGAGAGA--GTACGCTTGGCGCGCTCGCAAG 19628 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | || || | ||||| |||||||| |||| || || | || ||||| || || | Sbjct 19629 CAGTGCGAAGGCGACGGAGGGCACGGGGGTCGCCAGAGAGGTCCTTCTTGGTCTTGCGCT 19688 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 || || | | |||| || ||| || | | ||||| || | |||||||||||| Sbjct 19689 GGAAGTCCTTCTTGCAGTGGTCCAAGAGGT-TGGTGTCGAAGTCCTGACCACCCAAGTGG 19747 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 || || || || || || ||||| |||| ||| || | ||||| | | |||||| Sbjct 19748 GTGTCACCAGCAGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAAACA 19807 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTC 7597 || || ||||||||||||| ||| | || || ||||| || | | | ||| Sbjct 19808 TCGAAAGTACCACCACCCAAGTCGTAGATAAGGACGTTGCGCTCCTTGCCAGACTTGCCG 19867 Query 7598 TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 | | |||||||| || || || || || || || || || || ||||| || ||| Sbjct 19868 GCACCAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTG 19927 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 |||||||| || | | ||||| || || || || || || ||||| |||||||| Sbjct 19928 AGGCCAGCGATGGCACCAGCATCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCG 19987 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 ||||| || | ||| || | | || ||||| |||| Sbjct 19988 GGGACGGTGATGACAGCCTTCTCAACCTTCTTGCCGA 20024 >seq43 Length=61161 Score = 93.3 bits (102), Expect = 5e-14 Identities = 222/336 (66%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| || || ||||| | || || || || ||| | ||||| || |||| ||| Sbjct 17061 ATCGAAGTCCTCGCCACCAAGATGGGTGTCACCGTTGGTAGACTTGACCTCGAAGACACC 17120 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | ||| | | | || | ||| || ||||| ||||| || || ||| | || Sbjct 17121 GTTCTGAATCTCGAGAACGGAGATATCGAAGGTACCGCCACCAAGATCGTAAACGGCGAC 17180 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | || ||| | | ||| || ||||| || || | ||| || || || ||||| Sbjct 17181 GA------CGCGGTCCTCCTCCTTTTCCAGACCATAGGCCAGAGCAGCGGCAGTGGGTTC 17234 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | || ||| ||| ||||||||||||||| | ||||| || || || || || Sbjct 17235 GTTGACAACACGCAGAACGTTCAGGCCAGCAATCTGACCGGCATCCTTGGTAGCCTGGCG 17294 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| ||||| || ||||| || | | | || ||| ||| Sbjct 17295 CTGAGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCATTCTTCACGGGCTTCGAGAG 17354 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || | || ||| | || ||||| ||| | || || Sbjct 17355 GTAGGCCTCGGCGGTCTCCTTCATCTTGTTGAGGAC 17390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635065674402200