Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1012 286 4e-72 seq90 149 8e-31 >seq1012 Length=16087 Score = 286 bits (316), Expect = 4e-72 Identities = 964/1485 (65%), Gaps = 27/1485 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | || ||| || || || |||| || Sbjct 368 CCTCAGCACATGATCATGCGTGTCGCTGTGGGCATCTGGGGCGATGACGTTGAACGCGTC 427 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | || || ||| || |||||| | | || | ||||| | || || |||||| Sbjct 428 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTTACTCACGCCTCTCCTACGCTCTTC 487 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| || || || | || ||||| ||| |||||| | | | |||||||| Sbjct 488 AACGCCGGCACCCCTCAGGCTCAGCTGTCCTCTTGCTTCCTTGTCGATATGAAGGAGGAC 547 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || ||| | || || |||| ||| |||| || || ||||| || ||| ||| Sbjct 548 TCTATCGAGGGTATCTACGACACCCTCAAGACCTGCGCTATGATCTCCAAAATGGCCGGT 607 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911 || || || | | |||| || | || | | ||| ||| || || || Sbjct 608 GGCATTGGTCTCAATGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCTGGCACCAAC 667 Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971 ||| || | ||| | |||| ||||| || || || || ||| || ||||| || Sbjct 668 GGTACCTCTAACGGTGTCGTTCCCATGCTCCGTGTCTTCAATAACACTGCTCGCTACGTC 727 Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 |||||| ||| ||| | | || || | || | || || ||||| |||||| Sbjct 728 GACCAAGGTGGCAACAAGCGCCCC---GGTGCTTTTGCTATTTACCTCGAGCCTTGGCAC 784 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || || || | || ||| | || | || ||||| || | ||||||| || | Sbjct 785 GCTGACGTCTTCGACTTCTTGGATCTTCGCAAGAACCATGGCAAGGAGGAGGTCCGCGCC 844 Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 ||||| || ||| |||||| ||||| || |||||||||||||||||||| ||| ||| Sbjct 845 CGCGACCTTTTCCTCGCTCTTTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAAGAAC 904 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 || | ||| ||||| | || || || || || ||||| |||| ||| ||| || Sbjct 905 GGAGACTGGACTCTCATGTGCCCCAACGAGTGTCCTGGTCTTGCCGACTGCTACGGG-GA 963 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262 |||||| || |||| ||| ||||||||| | || | | | | | || ||| | Sbjct 964 GGAGTTCGAGACCCTGTACGAGAAGTACGAGCA-GATGGGCAAGGGTC-GCAAGACCAT- 1020 Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321 | || | | | | ||| | || |||||| || |||| |||||||| || | || | Sbjct 1021 CAAGGCCCAAAAGCTCTGGTATGCCATTCTCGAGGCTCAGACCGAGACCGGCAACCCCTT 1080 Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381 ||||| ||||| || || |||| ||||| || || ||||| ||||| ||| Sbjct 1081 CATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTACTATCCG 1140 Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 || ||||||||||| || || ||| | |||| | |||||| ||||| || Sbjct 1141 TAGCTCCAACCTCTGCACTGAGATCATCGAATACTGCGCGCCTGATGAGGTCGCTGTATG 1200 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATT 112500 |||||| || || |||| || |||| | || || | || || | | | || | Sbjct 1201 TAACCTGGCCTCGCTCGCCCTGCCCACCTTCGTTGACTACAACGAGGGTGTC-TACGACT 1259 Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560 | || |||||||| || || | || ||||| |||||| |||| || Sbjct 1260 TCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGTAACCTCAACAGAATTATCGACG 1319 Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || ||||| || || ||||| || || ||| | ||||| || ||||||| Sbjct 1320 TCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATTGGTC 1379 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTTGATTCCGAC 112679 ||||||| || ||||| || |||| ||| || | || || | | ||||| ||| | Sbjct 1380 TCGGTGTTCAGGGTCTTGCCGATGCCTTC-TTGGCTCTCCGCATGCCCTTTGAGTCCCCC 1438 Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739 ||||| || |||| | ||||| |||||||| || ||||| || ||| | Sbjct 1439 GAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCACGCTGCCCTT---ACC 1495 Query 112740 AGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 | |||| ||||||| || || ||||| || || || | |||||||| || | | Sbjct 1496 ATGTCGGTGCAGTTGGCCAGGGAGGAGGGTCCCTACGAGACGTACGAGGGTTCCCCTGTT 1555 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGG 112856 || || || | || || | || |||||| | | | || || | || || |||||| Sbjct 1556 TCTCAGGGCATCCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGACTGG 1615 Query 112857 GACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 112916 || ||||| ||||| | |||||| || | ||| | || ||| ||| | | || || Sbjct 1616 GATGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTTGTCGCGCCC 1675 Query 112917 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 112976 ||||| || ||| |||| | || |||||||| || ||||| ||||| || |||||||| Sbjct 1676 ATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTACACC 1735 Query 112977 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036 |||| ||||||| | | | ||| || || |||||| | | |||||| ||| Sbjct 1736 TCGAATATCTATCAGCGCCGTGTCCTTGCTGGCGAGTTTCAGGTAGTCAACCCTTGGCTC 1795 Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 || | |||||| || || || || |||||| | | ||||||| Sbjct 1796 TTGAAGGACCTCGTCGATATGGGCCTGTGGTCCGATGCTATGAAG 1840 >seq90 Length=51520 Score = 149 bits (164), Expect = 8e-31 Identities = 169/225 (75%), Gaps = 9/225 (4%) Strand=Plus/Minus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155 |||||| |||||||| || |||| ||||| || || |||||| | |||||| || Sbjct 5470 GCCATC---ACAGTTCCTTGCATTCGTAAGAAGGCCGACTGGGCTCTCAAGTGGATTAGC 5414 Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215 ||| ||||| ||||| || |||| || | ||||| || || |||||||| Sbjct 5413 GATGAGAAGTCC---TCCTTCGCCCAGCGCCTGGTTGCATTCGCTGCCGTCGAGGGTATT 5357 Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275 |||||| ||| |||| | |||| | |||||||||||||| ||||||||||| ||| Sbjct 5356 TTCTTCAGTGGCGCCTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGT 5297 Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || ||||||||| ||||||||||||||||||||||| || ||| Sbjct 5296 CTGACCTTCTCCAATGAGCTTATCTCTCGTGACGAGGGTCTGCAC 5252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620676795287600