Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 286 4e-72
seq90 149 8e-31
>seq1012
Length=16087
Score = 286 bits (316), Expect = 4e-72
Identities = 964/1485 (65%), Gaps = 27/1485 (2%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| ||||| | || ||| || || || |||| ||
Sbjct 368 CCTCAGCACATGATCATGCGTGTCGCTGTGGGCATCTGGGGCGATGACGTTGAACGCGTC 427
Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731
| || || ||| || |||||| | | || | ||||| | || || ||||||
Sbjct 428 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTTACTCACGCCTCTCCTACGCTCTTC 487
Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791
||||| || || || | || ||||| ||| |||||| | | | ||||||||
Sbjct 488 AACGCCGGCACCCCTCAGGCTCAGCTGTCCTCTTGCTTCCTTGTCGATATGAAGGAGGAC 547
Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851
|| ||| | || || |||| ||| |||| || || ||||| || ||| |||
Sbjct 548 TCTATCGAGGGTATCTACGACACCCTCAAGACCTGCGCTATGATCTCCAAAATGGCCGGT 607
Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAAT 111911
|| || || | | |||| || | || | | ||| ||| || || ||
Sbjct 608 GGCATTGGTCTCAATGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCTGGCACCAAC 667
Query 111912 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 111971
||| || | ||| | |||| ||||| || || || || ||| || ||||| ||
Sbjct 668 GGTACCTCTAACGGTGTCGTTCCCATGCTCCGTGTCTTCAATAACACTGCTCGCTACGTC 727
Query 111972 AACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025
|||||| ||| ||| | | || || | || | || || ||||| ||||||
Sbjct 728 GACCAAGGTGGCAACAAGCGCCCC---GGTGCTTTTGCTATTTACCTCGAGCCTTGGCAC 784
Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085
|| || || | || ||| | || | || ||||| || | ||||||| || |
Sbjct 785 GCTGACGTCTTCGACTTCTTGGATCTTCGCAAGAACCATGGCAAGGAGGAGGTCCGCGCC 844
Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145
||||| || ||| |||||| ||||| || |||||||||||||||||||| ||| |||
Sbjct 845 CGCGACCTTTTCCTCGCTCTTTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAAGAAC 904
Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204
|| | ||| ||||| | || || || || || ||||| |||| ||| ||| ||
Sbjct 905 GGAGACTGGACTCTCATGTGCCCCAACGAGTGTCCTGGTCTTGCCGACTGCTACGGG-GA 963
Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTG 112262
|||||| || |||| ||| ||||||||| | || | | | | | || ||| |
Sbjct 964 GGAGTTCGAGACCCTGTACGAGAAGTACGAGCA-GATGGGCAAGGGTC-GCAAGACCAT- 1020
Query 112263 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 112321
| || | | | | ||| | || |||||| || |||| |||||||| || | || |
Sbjct 1021 CAAGGCCCAAAAGCTCTGGTATGCCATTCTCGAGGCTCAGACCGAGACCGGCAACCCCTT 1080
Query 112322 TATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 112381
||||| ||||| || || |||| ||||| || || ||||| ||||| |||
Sbjct 1081 CATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTACTATCCG 1140
Query 112382 GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441
|| ||||||||||| || || ||| | |||| | |||||| ||||| ||
Sbjct 1141 TAGCTCCAACCTCTGCACTGAGATCATCGAATACTGCGCGCCTGATGAGGTCGCTGTATG 1200
Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATT 112500
|||||| || || |||| || |||| | || || | || || | | | || |
Sbjct 1201 TAACCTGGCCTCGCTCGCCCTGCCCACCTTCGTTGACTACAACGAGGGTGTC-TACGACT 1259
Query 112501 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATA 112560
| || |||||||| || || | || ||||| |||||| |||| ||
Sbjct 1260 TCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGTAACCTCAACAGAATTATCGACG 1319
Query 112561 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620
|| ||||| || || ||||| || || ||| | ||||| || |||||||
Sbjct 1320 TCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCCCATTGGTC 1379
Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTTGATTCCGAC 112679
||||||| || ||||| || |||| ||| || | || || | | ||||| ||| |
Sbjct 1380 TCGGTGTTCAGGGTCTTGCCGATGCCTTC-TTGGCTCTCCGCATGCCCTTTGAGTCCCCC 1438
Query 112680 GAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCG 112739
||||| || |||| | ||||| |||||||| || ||||| || ||| |
Sbjct 1439 GAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCACGCTGCCCTT---ACC 1495
Query 112740 AGTTCGG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796
| |||| ||||||| || || ||||| || || || | |||||||| || | |
Sbjct 1496 ATGTCGGTGCAGTTGGCCAGGGAGGAGGGTCCCTACGAGACGTACGAGGGTTCCCCTGTT 1555
Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTGG 112856
|| || || | || || | || |||||| | | | || || | || || ||||||
Sbjct 1556 TCTCAGGGCATCCTCCAGTACGACATGTGGAATGTTAAGCCCTCGGATCTCTGGGACTGG 1615
Query 112857 GACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCA 112916
|| ||||| ||||| | |||||| || | ||| | || ||| ||| | | || ||
Sbjct 1616 GATGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTTGTCGCGCCC 1675
Query 112917 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 112976
||||| || ||| |||| | || |||||||| || ||||| ||||| || ||||||||
Sbjct 1676 ATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGCCCTACACC 1735
Query 112977 ACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTC 113036
|||| ||||||| | | | ||| || || |||||| | | |||||| |||
Sbjct 1736 TCGAATATCTATCAGCGCCGTGTCCTTGCTGGCGAGTTTCAGGTAGTCAACCCTTGGCTC 1795
Query 113037 GTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081
|| | |||||| || || || || |||||| | | |||||||
Sbjct 1796 TTGAAGGACCTCGTCGATATGGGCCTGTGGTCCGATGCTATGAAG 1840
>seq90
Length=51520
Score = 149 bits (164), Expect = 8e-31
Identities = 169/225 (75%), Gaps = 9/225 (4%)
Strand=Plus/Minus
Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT--- 102155
|||||| |||||||| || |||| ||||| || || |||||| | |||||| ||
Sbjct 5470 GCCATC---ACAGTTCCTTGCATTCGTAAGAAGGCCGACTGGGCTCTCAAGTGGATTAGC 5414
Query 102156 GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATC 102215
||| ||||| ||||| || |||| || | ||||| || || ||||||||
Sbjct 5413 GATGAGAAGTCC---TCCTTCGCCCAGCGCCTGGTTGCATTCGCTGCCGTCGAGGGTATT 5357
Query 102216 TTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGT 102275
|||||| ||| |||| | |||| | |||||||||||||| ||||||||||| |||
Sbjct 5356 TTCTTCAGTGGCGCCTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGT 5297
Query 102276 CTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|| ||||||||| ||||||||||||||||||||||| || |||
Sbjct 5296 CTGACCTTCTCCAATGAGCTTATCTCTCGTGACGAGGGTCTGCAC 5252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620676795287600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |