Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1012 192 7e-44 seq142 98.7 1e-15 >seq1012 Length=16087 Score = 192 bits (212), Expect = 7e-44 Identities = 1018/1603 (64%), Gaps = 61/1603 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 ||| | |||||| ||||| |||||||| |||||| || || ||||| | ||| | | Sbjct 1999 GTTAAGCGACTGCGACTGGTCGATGAAGGCACCACGGTCGGCAGCCATCTGCACGACGGT 1940 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || || || |||||||| || |||||||||| |||| || ||||||| Sbjct 1939 ACGCT---GGGAGATTTCCCAAACGGTCTTGTACAGTGCTTTGACCTCGGTAGGAATGTT 1883 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGA 109673 |||||| |||||||| ||| || | || | | | |||||| | | || Sbjct 1882 GGGGATGTTCTGAATAGA---ACCGTTCTCGGCAATAATACGGTTCTTCATAGCATCGGA 1826 Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCA 109731 ||| || || | | ||| || | ||||| | | ||||| || ||| || Sbjct 1825 CCACAGGCCCATATCGACGAGGTCCTT--CAAGAGCCAAGGGTTGACTACCTGAAACTCG 1768 Query 109732 CCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791 |||||||| || || | ||||| || | |||||||| ||||| |||||||||||| Sbjct 1767 CCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAAGCACTCATTGTTG 1708 Query 109792 CCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGA 109851 || | ||| || | ||| || || |||||||| || | || ||| ||| |||| | Sbjct 1707 CCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAGAGAGTTGCGGACA 1648 Query 109852 CCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTC 109911 || | | ||| | | |||| || || ||||| || | || | | | | | Sbjct 1647 CCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAGAGATC-CGAG-----GGC 1594 Query 109912 TCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTC 109971 | | ||| |||||| || || || | |||| || | |||| ||||||| | | || Sbjct 1593 TTAACATTCCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAACCCTCGTACGTC 1534 Query 109972 TCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATA 110031 ||||| | ||||| || |||||||| || || || || || || || Sbjct 1533 TCGTAGGGACCCTCCTCCCTGGCCAACTGCACCGACATGGTAAGGGCAGCGTGGTAGATT 1474 Query 110032 GTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAA----G 110084 ||||| || || | || ||||| |||| || | || ||||| | | Sbjct 1473 GTCTCGAATATCTTC---TTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGGCATGCGG 1417 Query 110085 ACCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 | | ||||| |||| || ||||||||||||||||||||||||||||| || Sbjct 1416 AGAGCCAAGAAGG----CATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTGGCG 1361 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 |||||| | ||||| | || ||||| |||| |||||| | | ||||| Sbjct 1360 CATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTCTGTTGAG 1301 Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264 || || || |||| || ||||| || | | | ||| | | | ||| Sbjct 1300 GTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA-GACACC--CTC 1244 Query 110265 CTTATTGACAT---ATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTC 110321 || | | || | |||| || || | || || || || || |||| ||| || Sbjct 1243 GTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTCATC 1184 Query 110322 TTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTT 110381 || |||||| | || || || || | |||||| || || ||||| ||| Sbjct 1183 AGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTACCCAGGTT 1124 Query 110382 CTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTC 110441 |||||| || ||| |||| |||||||| ||||||||| | ||| | || || || Sbjct 1123 CTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGTCTC 1064 Query 110442 CGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCG 110499 ||||| | || ||||||||| | ||| | | ||| || || |||| | Sbjct 1063 GGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTGATGGTCTTGCGACC-CT 1005 Query 110500 AGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAA 110559 | || || | ||||||||| ||||| | ||| || |||| ||||| || | | Sbjct 1004 TGCCCATC-TGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTCCCCGTAGCAGTCGGCA 946 Query 110560 AGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTC 110619 ||||| || || ||| || | ||| | ||| | ||| || ||| || |||||| Sbjct 945 AGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACTCTCTTC 886 Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCA 110679 ||||| || || || ||||| | || ||||||||| ||| || |||| || | Sbjct 885 ATGAAGAGATCGGGGATCCAAAGAGCGAGGAAAAGGTCGCGGGCGCGGACCTCCTCCTTG 826 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAG---- 110735 || ||||| ||| || ||||| ||||| | || || | |||||| || ||||| Sbjct 825 CCATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCTCGAGGTAA 766 Query 110736 ATAG--ACAGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCA 110793 |||| | ||| || | ||| | | || | |||| || ||||| || ||| | Sbjct 765 ATAGCAAAAGCACCGGGGCGCTT--GTTG-CCACCTTGGTCGACGTAGCGAGCAGTGTTA 709 Query 110794 TTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTG 110853 |||||||| | |||||| |||| | || | || ||| || || || ||| Sbjct 708 TTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCAATGTAA 649 Query 110854 GACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATT 110913 || | || || ||| ||||| || | |||||| ||||| ||| || || Sbjct 648 GAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCATTTTGGAGATC 589 Query 110914 TGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAAT 110972 || || ||| |||| || | || ||||| || || || || |||| | | | Sbjct 588 ATAGCGCAGGTCT-TGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATATCGAC 530 Query 110973 TAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGC 111032 || |||||||| |||| ||||| |||| || || || |||||||| ||||| | || Sbjct 529 AAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGC 470 Query 111033 ATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGA 111073 ||| | | ||| |||| |||||| |||||| || |||| Sbjct 469 GTGA--GTAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGA 429 >seq142 Length=44727 Score = 98.7 bits (108), Expect = 1e-15 Identities = 274/415 (66%), Gaps = 9/415 (2%) Strand=Plus/Minus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| ||| |||||||| || ||||| | |||||| | ||| || ||||| |||||| Sbjct 6348 TGTTGAAGCCGTCCATCTCGGTGAGGATCTGGTTCAGCGTGGCCTCGCGCTCGTCGTTGC 6289 Query 11648 AGGGCATACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATA 11704 | ||| | || || | | | |||| ||||| ||||| || ||||| | Sbjct 6288 CGCCCATGCGGTTGCCCTCCTGTCTCGACCGGCCGATGGCGTCGATCTCGTCAATGAAGA 6229 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| || ||| | || || || || || | | || | Sbjct 6228 TGATGCAAGGCGCGTTCTTCCGCGCCGTCGCAAACAGGTCGCGGACTCTGGAGGGACCGA 6169 Query 11765 CACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGAC 11823 |||| ||||||||||| ||||| | | | | || ||||| |||||| ||| ||| Sbjct 6168 CACCGACGAACATCTCTACGAACTCGGAGCCGCTCACGCTGAA-GAAGGGCACACCGGAC 6110 Query 11824 TCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGG 11883 || || || |||| ||||| || |||||||| || || || | ||||| || | Sbjct 6109 TCGCCGGCCGTGGCCTTGGCGAGCAGCGTCTTACCAGTTCCGGGAGGGCCAGCCAGGATA 6050 Query 11884 GCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGT 11941 || || |||||||||||||| || || || | ||||||| || |||| |||||| Sbjct 6049 GCACCGCGGGGGATCTTGGCGCCCAACCTC--TCGAAGCGCTCCGGGGTCTTAAGGAAGC 5992 Query 11942 CCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 |||| |||| || ||| |||||| ||| || || |||| ||| |||| Sbjct 5991 TGACAAACTCCATAATCTCCGTCTTGGCCTCGTCCATGCCGGCAACGTCGCTGAA 5937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588913752599000