Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1012 140 4e-28 seq90 98.7 1e-15 >seq1012 Length=16087 Score = 140 bits (154), Expect = 4e-28 Identities = 937/1490 (63%), Gaps = 35/1490 (2%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 ||||||| | | |||||| || || || | ||| || || | ||| |||||| Sbjct 1840 CTTCATAGCATCGGACCACAGGCCCATATCGACGAGGTCCTTCAAGAGCCAAGGGTTGAC 1781 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 | | |||||| || || ||| | | | ||||||| |||| |||||||| || || Sbjct 1780 TACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGTGTAGGGCTCGAA 1721 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 ||| ||||| || |||||||| || | |||| ||| || ||||| || || | | || Sbjct 1720 GCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACAAGCAG 1661 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 106080 | ||| || | ||| | | |||||| | ||||| ||| |||||||||| || || Sbjct 1660 AGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCAGTCCCAGA-GAT 1602 Query 106081 CTT--GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCC 106138 | || || || |||| |||| || | || || | || || || || |||||| Sbjct 1601 CCGAGGGCTTAACATTCC-ACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAACCC 1543 Query 106139 TCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGC 106197 || | ||||| |||| ||| | | ||||| | ||| | | |||| || Sbjct 1542 TCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACTGCACCGACATGGTA-AGGGCAGC 1484 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 ||| || || || || || || || | || ||||| || ||||| | Sbjct 1483 GTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCAAAGGG 1424 Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 |||| | || |||| || ||||| |||||||| | |||||| || | ||| Sbjct 1423 CATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGTG 1364 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 106377 ||||| || || || || || || || || || ||| || | || ||| Sbjct 1363 GCGCATGTTGCTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACGTCGATAATTCTGTT 1304 Query 106378 TAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGT 106437 || || ||| | || |||| || || || || | | || | | | Sbjct 1303 GAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGTA---GACACC 1247 Query 106438 CTCTTCATTGACAT---ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 106494 ||| | | | || | | || ||||||| || |||| || || ||||| ||| Sbjct 1246 CTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAGGCCAGGTTACATACAGCGACCTC 1187 Query 106495 ATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAA 106554 ||| | ||| || | || || || || | |||||| || || || |||| Sbjct 1186 ATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGGAGCTACGGATAGTACCCAG 1127 Query 106555 ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 106614 ||||| ||||| ||||| |||| |||||||||||||||||| |||| | || || Sbjct 1126 GTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATGAAGGGGTTGCCGGT 1067 Query 106615 CTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG- 106672 ||| ||||| | || |||||| || | ||| | | | | | || | |||| ||| Sbjct 1066 CTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGGCCTTG----ATGGTCTTGC 1011 Query 106673 GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-G 106729 | || | ||| | ||||||||| ||| |||| || |||||||| ||| || | Sbjct 1010 GACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGGTCTCGAACTCCTC-CCCGTAGCAG 952 Query 106730 TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACC 106789 |||| ||||| || || || || || | |||| ||| | || || ||| || Sbjct 951 TCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGTCCAGTCTCCGTTCTTCTCCACT 892 Query 106790 CGCTTCATGAAAAGGTCTGGAATCC--ACAGGGATGAAAAGAGATCTCTACACCGAGCCT 106847 | ||||||||| || || || |||| | || || |||| || || | || ||| Sbjct 891 CTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAAA--AGGTCGCGGGCGCGGACCT 834 Query 106848 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907 | || | || ||||| || | || | ||| || | || || |||||||| |||| Sbjct 833 CCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAAGACGTCAGCGTGCCAAGGCT 774 Query 106908 CAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCT 106963 | || || | || | || || | | | | ||| |||| | || ||||| || Sbjct 773 CGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTG-CCACCTTGGTCGACGTAGCGAGCA 715 Query 106964 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 107023 ||| || || || || ||||| |||| | ||| | || ||| || || || | Sbjct 714 GTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTAGAGGTACCGTTGGTGCCAGCA 655 Query 107024 ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTT 107083 || ||| | || | | |||| | | ||||| || || ||| || Sbjct 654 ATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGACCAATGCCACCGGCCATTTTG 595 Query 107084 GAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTG 107143 ||||| || || | | || || | |||||||| | ||| ||||||||||| | Sbjct 594 GAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCATA 535 Query 107144 GCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGT 107203 ||| |||||||||| ||||| ||| | || || || || |||||||| || || Sbjct 534 TCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTGCCGGCGTTGAAGAGCGTAGGA 475 Query 107204 GTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAA 107261 | |||||| | | | | |||| |||||| || ||| || || | ||| |||| Sbjct 474 GAGGCGTGA--GTAAAGAACTTGCTCGACATCAGGTTGTAGGTTTCGATGACGCGTTCAA 417 Query 107262 TGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 ||| || || |||||| | || |||||||| | ||||| || ||| Sbjct 416 CGTCATCGCCCCAGATGCCCACAGCGACACGCATGATCATGTGCTGAGGT 367 >seq90 Length=51520 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/225 (70%), Gaps = 9/225 (4%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| |||||||| || || || ||||| ||||| |||||| || || ||||||||||| Sbjct 5252 GTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGACCGGGCATGAGACC 5311 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | |||| | || | || |||||| |||||||| || Sbjct 5312 ACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAAATACCCTCGACGGC 5371 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAACCATTTCAT 117461 || || |||| ||||||| |||||||||| ||||| || || ||| || | Sbjct 5372 AGCGAATGCAACCAGGCGCTGGGCGAAGGAG---GACTTCTCATCGCTAATCCACTTGAG 5428 Query 117462 TGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||||| | |||||||| ||| || || || || |||||| Sbjct 5429 AGCCCAGTCGGCCTTCTTACGAATGCAAGGAACTGT---GATGGC 5470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589918446404200