Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq1955 98.7 6e-16
seq460 89.7 3e-13
>seq1955
Length=8910
Score = 98.7 bits (108), Expect = 6e-16
Identities = 151/213 (71%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || ||
Sbjct 3772 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 3713
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || || || |||||||| | || | |||||||||||
Sbjct 3712 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 3653
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| || | ||| || |||| ||| || ||
Sbjct 3652 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGT 3597
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| |||||||| |||||||| |||||||||||
Sbjct 3596 CTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 3564
>seq460
Length=27106
Score = 89.7 bits (98), Expect = 3e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| || | | || |||| |||||||| |||||||| ||
Sbjct 24581 TCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAA 24522
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||| || | || | ||||||||||| ||||| |||||||
Sbjct 24521 ATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTGACGTTG 24462
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | || || |||| || ||||| ||||| || | ||||| |||
Sbjct 24461 TCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTCTTTCCGGTCAAGGTCTTGACA 24402
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 24401 AAGATCTGCATA 24390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324600148029240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |