Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1955 98.7 6e-16 seq460 89.7 3e-13 >seq1955 Length=8910 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 3772 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 3713 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || |||||||| | || | ||||||||||| Sbjct 3712 AGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 3653 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| || | ||| || |||| ||| || || Sbjct 3652 ATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGT 3597 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| |||||||| ||||||||||| Sbjct 3596 CTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 3564 >seq460 Length=27106 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || | | || |||| |||||||| |||||||| || Sbjct 24581 TCCTTCTGAATGTTGTAGTCGGACAAAGTGCGACCATCTTCCAGCTGCTTTCCGGCGAAA 24522 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||| || | || | ||||||||||| ||||| ||||||| Sbjct 24521 ATCAAACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGATTTGACGTTG 24462 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || |||| || ||||| ||||| || | ||||| ||| Sbjct 24461 TCAATGGTGTCGGATGATTCGACCTCGAGTGTGATGGTCTTTCCGGTCAAGGTCTTGACA 24402 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 24401 AAGATCTGCATA 24390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324600148029240