Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1012 307 2e-78 seq90 156 8e-33 >seq1012 Length=16087 Score = 307 bits (340), Expect = 2e-78 Identities = 1044/1604 (65%), Gaps = 88/1604 (5%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || | |||||||||| ||||| || ||||||||||| ||||| Sbjct 2127 ACGGTGAACTGGATGGGCGCGGCAGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTC 2068 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 || || ||| ||| || | |||||| |||| ||| |||| | ||| | Sbjct 2067 AGACCGAGCTT---CCAACCAGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATAGT 2018 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | | |||| | ||| || ||||| |||||| ||||| | | Sbjct 2017 TGGGTCCTTCATGTGG---------ATGTTAAGCGACTGCGACTGGTCGATGAAGGCACC 1967 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| || ||||| | | || | |||||||| ||||| ||||||||| | | Sbjct 1966 ACGGTCGGCAGCCATCTGCACGACGGTACGCTGGGAGATTTCCCAAACGGTCTTGTACAG 1907 Query 212789 TTCTTTGAGGTCCTCTG--GGAA-GCCGGGGATGTTCTGCACAGACCCCCTGTGT---AT 212842 | |||||| |||| | |||| | |||||||||||| | ||| || | | || Sbjct 1906 TGCTTTGA---CCTCGGTAGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCAAT 1850 Query 212843 GGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAG 212902 | | | | ||| | ||| ||| |||||| | | ||| ||| | || Sbjct 1849 AATACGGTTCTT---CATAGCATCGGACCACAGGCCCATATCGACGAGGTCCTTCAAGAG 1793 Query 212903 GTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGT 212962 ||||||||||| ||| || || || | || || | | ||| || | || || || Sbjct 1792 CCAAGGGTTGACTACCTGAAACTCGCCAGCAAGGACACGGCGCTGATAGATATTCGAGGT 1733 Query 212963 GTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGG 213022 ||||||||||| || ||| ||||| |||| ||||| | |||||||| || |||||||| Sbjct 1732 GTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGG 1673 Query 213023 AGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCA 213082 || || || ||| ||| | || ||||||| ||| | | || | |||| Sbjct 1672 CGCGACAAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGCATCCCA 1613 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| || ||| | ||| || ||||||||||| |||| | |||||| Sbjct 1612 GTCCCAG---------AGATCCGAGGGCTTAACATTCCACATGTCGTACTGGAGGATGCC 1562 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 | || ||| |||| ||| | |||||| || | |||| |||||| || ||| Sbjct 1561 CTGAGAAACAGGGGAACCCTCGTACGTCTCGTAGGGACCCTCCTCCCTGGCCAACT-GCA 1503 Query 213203 G-GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 ||| |||||||||| |||||| || || ||||||| | ||||||| | | Sbjct 1502 CCGACATGGTAAGGGCAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGGTCACGAG 1443 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCC 213321 | || |||||| |||||||| | ||| |||| || || ||||| || | Sbjct 1442 CTTCGGGGGACTCAAAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACAC 1383 Query 213322 CGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAG 213380 ||| || ||||| | ||| | || ||| ||| |||| ||||| | ||||| | Sbjct 1382 CGAGACCAATGGGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGGACCGGGTAGTGG 1324 Query 213381 TTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTAC 213440 ||| |||||| || |||||||||| || | || | |||||| | | || | | Sbjct 1323 TTGACGTCGATAATTCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTC 1264 Query 213441 TCGTGATTGAACACGTAGCCCCCGTCCTGC------ACAAACTCAGGCAGGGCGATGCTG 213494 | | || ||||| | || || | || || |||||||||| | Sbjct 1263 TGG------AAGTCGTAGACACCCTCGTTGTAGTCAACGAAGGTGGGCAGGGCGAGCGAG 1210 Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 |||||||| || || || ||||| | || | ||| || |||||||| ||||| ||| Sbjct 1209 GCCAGGTTACATACAGCGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGG 1150 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTG 213614 ||| || ||||| || |||||||||| ||||| ||| |||||||| ||||||| Sbjct 1149 TTGGAGCTACGGATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTG 1090 Query 213615 TAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGT 213672 ||||||||| ||||| |||||||| ||| | | | || || ||| |||||| | Sbjct 1089 TAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAAT--GGCATACCAGAGCT 1032 Query 213673 ACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC--CTCGTACTGTTCGTAGAG 213730 |||||||| | | ||| || || | | |||||||| ||||| || Sbjct 1031 TTTGGGCCTTGATGGTCTTGC-GAC----CCTTGCCCATCTGCTCGTACTTCTCGTACAG 977 Query 213731 CTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAG 213790 | ||| || | || || | | || || ||||| ||| |||||||| Sbjct 976 GGTCTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAG 917 Query 213791 GCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGG 213849 ||||||| |||| | |||| ||||||| |||||| || || |||| ||| || ||| Sbjct 916 AGTCCAGTCTCCGTTCTTCTCC-ACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGA 858 Query 213850 TGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGT 213909 ||| ||||| | || | ||| ||| ||| ||| ||||| ||||| | |||| Sbjct 857 GGAAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGT 798 Query 213910 CAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---C 213966 | |||| ||| |||||||| ||||| | ||| || ||||| || || || | |||| | Sbjct 797 CGAAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGC 738 Query 213967 CGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGTACCAGC 214022 | || ||||| || | || | || | ||||||| || || | ||| || | Sbjct 737 CACCTTGGTCGACG----TAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACA 682 Query 214023 CCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT--TGCTCA 214080 ||||| || |||||||| || || || || ||||||| || | | | || || Sbjct 681 CCGTTAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACA 622 Query 214081 TGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124 | |||| || ||||||||||| ||||||||||| |||||| Sbjct 621 TTGAGA--CCAATGCCACCGGCCATTTTGGAGATCATAGCGCAG 580 >seq90 Length=51520 Score = 156 bits (172), Expect = 8e-33 Identities = 344/506 (68%), Gaps = 15/506 (3%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| | || | |||||||||||||| ||||| || ||| |||||||||||| Sbjct 4950 TGGTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTTCCGCCCAGGGAGATGTTCTCC 5009 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTC-AGGCCCATCTGTTCCAGCAG 47958 |||||| |||||||||| | || || | || |||| ||| | ||| || Sbjct 5010 ATGAAGTCAAAGGGGTTGGAAGACTTGTAGA-CCTTGTCGTTGCCAAGGGCAACCAAGAG 5068 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG- 48017 | | || |||||| |||| ||||| | ||| ||| || ||||||||| | |||| Sbjct 5069 GCGGTCGGCGACGAACTCAATGTACTGCTTCATCAGGCTGGAGTTCATGCCGAGCAGGGC 5128 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT-- 48075 ||| || | |||| ||| || ||||||| || ||||| || || || | | ||| Sbjct 5129 ACA-AGGAAGGGCCTCTGTCAGGAACTCCTGTTCAATCTGGACAGCGTCGACAATAATGT 5187 Query 48076 -CTGCTTAACGCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAG 48133 ||| |||| | | ||| || | || ||| ||||| | || | | |||| Sbjct 5188 CCTGGATAAC-CTGCTTGCTGGGGCGGTTCTTG---AGGTG---AGAGTACAAGAGGCAG 5240 Query 48134 GCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCA 48193 || ||||| |||||| || ||||| || ||| ||| | ||||||||| ||||| Sbjct 5241 GCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATAAGCTCATTGGAGAAGGTCAGACCG 5300 Query 48194 GGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATG 48253 ||||||| || | || ||||||||||| || | || || | |||| |||||| || Sbjct 5301 GGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCGCCACTGAAGAAAATA 5360 Query 48254 CCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATC 48313 ||||| || || ||||| || || | || |||| || | |||| || ||| Sbjct 5361 CCCTCGACGGCAGCGAATGCAACCAGGCGCTGGGCGAAGGAGGACTTCTCATCGCTAATC 5420 Query 48314 CAGGAAAGCGCCCAGTCTGCCTTCTT 48339 || || |||||||| |||||||| Sbjct 5421 CACTTGAGAGCCCAGTCGGCCTTCTT 5446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931434348627200