Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 331 2e-85
seq90 118 2e-21
>seq1012
Length=16087
Score = 331 bits (366), Expect = 2e-85
Identities = 889/1337 (66%), Gaps = 63/1337 (5%)
Strand=Plus/Minus
Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGC----GCAA-GACTGCGTCA 221420
|| ||||||| |||||||||||| | | || ||||| | ||| ||| || |
Sbjct 1545 CCCTCGTACGTCTCGTAGGGACCCTCC---TC--CCTGGCCAACTGCACCGACATGGTAA 1491
Query 221421 GGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAA 221479
|||||||||||||||| ||||| || ||| |||||||||| || | || ||||| ||
Sbjct 1490 GGGCAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGG-TCACGAGCTTCGGGGGAC 1432
Query 221480 GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATG 221539
|||||||| || || | ||| | ||||| || ||||| || |||| ||| |||
Sbjct 1431 TCAAAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATG 1372
Query 221540 GGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597
|| | ||| | | ||||| | ||| | || |||| |||| || |||||||||||
Sbjct 1371 GGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGGACCGGG-TAGTGGTTGACGTCGA 1314
Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657
| | |||||||||| || | ||| | |||||| ||||||||| | |
Sbjct 1313 TAATTCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGT 1254
Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717
| || |||| || || || || || | | ||||| | |||||
Sbjct 1253 AGACACCCTCGT--------TGTAG----TCAACGAAGGTGGGCAGGGCGAGCGAGGCCA 1206
Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777
||||||| || || ||||| || | || | |||||||| || |||||||||
Sbjct 1205 GGTTACATACAGCGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGG 1146
Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837
|| ||| || ||||||| || || || |||||| |||||||| ||||||||||
Sbjct 1145 AGCTACGGATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGA 1086
Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897
|||| ||||| ||| ||||| ||||||| | ||||| | |||||| | | ||
Sbjct 1085 GCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGG 1026
Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGAGCAT 221952
| | | ||| ||| ||||| | ||| || ||| | ||| || | |
Sbjct 1025 CCTTGATGGTC---TTGCG---ACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGG--T 974
Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012
|| |||| || ||||| ||| | || || |||||| | ||| ||||| ||| |
Sbjct 973 CTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGT 914
Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072
||||| ||| | | || |||| ||||||||| || |||||||| || || | ||
Sbjct 913 CCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAA 854
Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132
|| || | || || ||||||| ||| | ||| || | |||||||| || || ||
Sbjct 853 AAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAA 794
Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192
| |||||||||||| ||||| || || | || | ||| ||||| ||||||||||||||
Sbjct 793 GACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCACC 734
Query 222193 CTGATCCACCATCCTCTCCAG-AGCG---TTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248
|| || | | | | || || | ||||||| || || | || || | ||||
Sbjct 733 TTGGTCGA----CGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGT 678
Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACA 222308
| || |||||||||||| |||||| | ||| || | || | | || ||||
Sbjct 677 TAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGACA 622
Query 222309 T----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364
| || || |||||||| ||| |||||||| |||||| ||||||| ||||| |
Sbjct 621 TTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAG 562
Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424
|| ||||| |||||||||||||| | | | || || ||||| |||| ||||| |
Sbjct 561 ATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGA 502
Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484
| || | |||||| || ||||| ||| |||||| |||||| | || ||||||||
Sbjct 501 GGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACATCAGG 442
Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544
| ||| || || | ||| | | | || || || || || ||| | ||||
Sbjct 441 TTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATG 382
Query 222545 TACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTT 222602
||||| ||| || ||||| || || | |||| || ||||||||| | |
Sbjct 381 ATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCT--TCAGGAGGTACGATCTCT 324
Query 222603 CCAGAGTCTTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661
||| |||||||| || ||||| |||| || ||||| | | ||| || | ||| | |
Sbjct 323 CCAAGGTCTTGAAGCCGAAGTA-TTGATAGTTGAAGTCGCGGTCGTAGACGATGGCAGAG 265
Query 222662 TCCAGCTCCGACTTGTG 222678
|| |||||| ||| ||
Sbjct 264 TCAAGCTCCTCCTTATG 248
>seq90
Length=51520
Score = 118 bits (130), Expect = 2e-21
Identities = 295/452 (65%), Gaps = 15/452 (3%)
Strand=Plus/Minus
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| ||||| || || ||||| || ||||| || || ||||| || | ||||| | |
Sbjct 5391 AGCGCCTGGTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTA 5332
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||||||||| || || ||||||||| ||| ||| ||||| ||||| |||
Sbjct 5331 TCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAATGAGCTTATCT 5272
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056
| ||||||||||| |||| || || |||||||| | ||| | ||| | |
Sbjct 5271 CTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCTTGTACTC---TCACCT----C 5219
Query 26057 ACAAACCTTCTCAAGAGACCG--TCTACAG--TATCATCAAAGAGGCTGTGGAGATCGAG 26112
| |||| | || | | | | | ||| || || || ||||| |||| ||
Sbjct 5218 AAGAACCGCCCCAGCAAGCAGGTTATCCAGGACATTATTGTCGACGCTGTCCAGATTGAA 5159
Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATG 26172
||||||| | | ||||||||| ||| || |||
Sbjct 5158 CAGGAGTTCCTGACAGAGGCCCTTCCTTGTGCCCTGCTCGGCATGAACTCCAGCCTGATG 5099
Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGAC 26230
| || |||||||||| || ||||||| || || |||| || || || ||
Sbjct 5098 AAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCC--CTTGGCAACGACAAGG 5041
Query 26231 TCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290
|||||| | | ||||| || ||||| ||||| ||||| || ||| || |||||||
Sbjct 5040 TCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGAAAGACCA 4981
Query 26291 ACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
|||||||||| ||| | || | |||||| |||
Sbjct 4980 ACTTCTTTGAGAAGCGTGTTGCCGACTACCAA 4949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928746632715200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |