Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1012 331 2e-85 seq90 118 2e-21 >seq1012 Length=16087 Score = 331 bits (366), Expect = 2e-85 Identities = 889/1337 (66%), Gaps = 63/1337 (5%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGC----GCAA-GACTGCGTCA 221420 || ||||||| |||||||||||| | | || ||||| | ||| ||| || | Sbjct 1545 CCCTCGTACGTCTCGTAGGGACCCTCC---TC--CCTGGCCAACTGCACCGACATGGTAA 1491 Query 221421 GGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAA 221479 |||||||||||||||| ||||| || ||| |||||||||| || | || ||||| || Sbjct 1490 GGGCAGCGTGGTAGATTGTCTCGAATATCTTCTTGTTGAGG-TCACGAGCTTCGGGGGAC 1432 Query 221480 GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATG 221539 |||||||| || || | ||| | ||||| || ||||| || |||| ||| ||| Sbjct 1431 TCAAAGGGCATGCGGAGAGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATG 1372 Query 221540 GGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGA 221597 || | ||| | | ||||| | ||| | || |||| |||| || ||||||||||| Sbjct 1371 GGGCGGTGGCGCATGTTGCTGTTGCGAGC-CTCCTGGACCGGG-TAGTGGTTGACGTCGA 1314 Query 221598 TCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGA 221657 | | |||||||||| || | ||| | |||||| ||||||||| | | Sbjct 1313 TAATTCTGTTGAGGTTACGAACAACGACCTGGGTGACCTCGTGGAGCTTCTGGAAGTCGT 1254 Query 221658 ACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 | || |||| || || || || || | | ||||| | ||||| Sbjct 1253 AGACACCCTCGT--------TGTAG----TCAACGAAGGTGGGCAGGGCGAGCGAGGCCA 1206 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||||||| || || ||||| || | || | |||||||| || ||||||||| Sbjct 1205 GGTTACATACAGCGACCTCATCAGGCGCGCAGTATTCGATGATCTCAGTGCAGAGGTTGG 1146 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 || ||| || ||||||| || || || |||||| |||||||| |||||||||| Sbjct 1145 AGCTACGGATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGA 1086 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG 221897 |||| ||||| ||| ||||| ||||||| | ||||| | |||||| | | || Sbjct 1085 GCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAGCTTTTGGG 1026 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGG---TCTTTTCATAC--CCGGTATAGAGCAT 221952 | | | ||| ||| ||||| | ||| || ||| | ||| || | | Sbjct 1025 CCTTGATGGTC---TTGCG---ACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGG--T 974 Query 221953 GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACT 222012 || |||| || ||||| ||| | || || |||||| | ||| ||||| ||| | Sbjct 973 CTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGT 914 Query 222013 CCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAA 222072 ||||| ||| | | || |||| ||||||||| || |||||||| || || | || Sbjct 913 CCAGTCTCCGTTCTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGGAA 854 Query 222073 GAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 || || | || || ||||||| ||| | ||| || | |||||||| || || || Sbjct 853 AAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCGAA 794 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 | |||||||||||| ||||| || || | || | ||| ||||| |||||||||||||| Sbjct 793 GACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCACC 734 Query 222193 CTGATCCACCATCCTCTCCAG-AGCG---TTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 || || | | | | || || | ||||||| || || | || || | |||| Sbjct 733 TTGGTCGA----CGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGT 678 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACA 222308 | || |||||||||||| |||||| | ||| || | || | | || |||| Sbjct 677 TAGAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGC---GGATGC-GGTGGACA 622 Query 222309 T----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 | || || |||||||| ||| |||||||| |||||| ||||||| ||||| | Sbjct 621 TTGAGACCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAG 562 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 || ||||| |||||||||||||| | | | || || ||||| |||| ||||| | Sbjct 561 ATACCCTCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGA 502 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 | || | |||||| || ||||| ||| |||||| |||||| | || |||||||| Sbjct 501 GGGGTGCCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACATCAGG 442 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544 | ||| || || | ||| | | | || || || || || ||| | |||| Sbjct 441 TTGTAGGTTTCGATGACGCGTTCAACGTCATCGCCCCAGATGCCCACAGCGACACGCATG 382 Query 222545 TACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTT 222602 ||||| ||| || ||||| || || | |||| || ||||||||| | | Sbjct 381 ATCATGTGCTGAGGTCTCTCGGCAATCTTGCCGTCAAGCT--TCAGGAGGTACGATCTCT 324 Query 222603 CCAGAGTCTTGAACCCAAAGTAGTTGA-GGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661 ||| |||||||| || ||||| |||| || ||||| | | ||| || | ||| | | Sbjct 323 CCAAGGTCTTGAAGCCGAAGTA-TTGATAGTTGAAGTCGCGGTCGTAGACGATGGCAGAG 265 Query 222662 TCCAGCTCCGACTTGTG 222678 || |||||| ||| || Sbjct 264 TCAAGCTCCTCCTTATG 248 >seq90 Length=51520 Score = 118 bits (130), Expect = 2e-21 Identities = 295/452 (65%), Gaps = 15/452 (3%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| ||||| || || ||||| || ||||| || || ||||| || | ||||| | | Sbjct 5391 AGCGCCTGGTTGCATTCGCTGCCGTCGAGGGTATTTTCTTCAGTGGCGCCTTTGCCTCTA 5332 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||||||| || || ||||||||| ||| ||| ||||| ||||| ||| Sbjct 5331 TCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAATGAGCTTATCT 5272 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | ||||||||||| |||| || || |||||||| | ||| | ||| | | Sbjct 5271 CTCGTGACGAGGGTCTGCACACCGACTTCGCCTGCCTCTTGTACTC---TCACCT----C 5219 Query 26057 ACAAACCTTCTCAAGAGACCG--TCTACAG--TATCATCAAAGAGGCTGTGGAGATCGAG 26112 | |||| | || | | | | | ||| || || || ||||| |||| || Sbjct 5218 AAGAACCGCCCCAGCAAGCAGGTTATCCAGGACATTATTGTCGACGCTGTCCAGATTGAA 5159 Query 26113 AAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATG 26172 ||||||| | | ||||||||| ||| || ||| Sbjct 5158 CAGGAGTTCCTGACAGAGGCCCTTCCTTGTGCCCTGCTCGGCATGAACTCCAGCCTGATG 5099 Query 26173 AGCCAATACATTGAGTATGTGGCCGACCATCTGCTG--TGCCAGCTGGGACTCGCCAGAC 26230 | || |||||||||| || ||||||| || || |||| || || || || Sbjct 5098 AAGCAGTACATTGAGTTCGTCGCCGACCGCCTCTTGGTTGCC--CTTGGCAACGACAAGG 5041 Query 26231 TCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290 |||||| | | ||||| || ||||| ||||| ||||| || ||| || ||||||| Sbjct 5040 TCTACAAGTCTTCCAACCCCTTTGACTTCATGGAGAACATCTCCCTGGGCGGAAAGACCA 4981 Query 26291 ACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||||||| ||| | || | |||||| ||| Sbjct 4980 ACTTCTTTGAGAAGCGTGTTGCCGACTACCAA 4949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928746632715200