Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq460 91.5 1e-12 >seq460 Length=27106 Score = 91.5 bits (100), Expect = 1e-12 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| || || ||||| || || || || || ||||| ||| || | Sbjct 24840 ACGCAGACGGAGGACGAGGTGAAGCGTCGACTCCTTCTGAATGTTGTAATC-GCTCAGGG 24782 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | || || || ||||||||||||||||| ||||| || || |||||||| || | Sbjct 24781 TGCGACCGTCCTCCAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCAGGAGGGATAC 24722 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||| ||||||||||| ||| || || || || || | || | || || Sbjct 24721 CCTCCTTATCTTGAATCTTGGATTTAACGTTGTCGATTGTGTCCGATGACTCAA-CCTCG 24663 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| | ||||| ||||| ||||| Sbjct 24662 AGCGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATTTG 24622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267816524026340