Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1012 113 5e-20 seq90 98.7 1e-15 >seq1012 Length=16087 Score = 113 bits (124), Expect = 5e-20 Identities = 934/1493 (63%), Gaps = 43/1493 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| | |||||| || || ||| |||| ||| Sbjct 368 CCTCAGCACATGATCATGCGTGTCGCTGTGGGCATCTGGGGCGATGACGTTGAACGCGTC 427 Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | || || ||| || |||||| |||| | | | | |||||| | || || |||| Sbjct 428 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTTAC--TCACGCCTCTCCTACGCTCT 485 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || || || | ||| ||||| |||||||||| ||| | ||||||| Sbjct 486 TCAACGCCGGCACCCCTCAGGCTCAGCTGTCCTCTTGCTTCCTTGTCGATATGAAGGAGG 545 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 |||| ||| | |||||||| | || || | | || || ||||| || ||| | Sbjct 546 ACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGCGCTATGATCTCCAAAATGGCCG 605 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509 | || ||||| | | |||| | | || | ||| ||| || || | Sbjct 606 GTGGCATTGGTCTCAATGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCTGGCACCA 665 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| || | ||| | |||| ||||| || || || || ||| || ||||| | Sbjct 666 ACGGTACCTCTAACGGTGTCGTTCCCATGCTCCGTGTCTTCAATAACACTGCTCGCTACG 725 Query 75570 TAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | |||| | ||| ||| || | | || | ||| | || || ||||| Sbjct 726 TCGACCAAG-GTGGCAACAAGCGCCCCGGTGCTTTTGCTATTTACCTCGAGCCTTGGCAC 784 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || || || | || ||| | || | || ||||| || | || |||| || Sbjct 785 GCTGACGTCTTCGACTTCTTGGATCTTCGCAAGAACCATGGCAAGGAGGAGGTCCGCGCC 844 Query 75686 AGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743 | || |||||| | | || ||||| || || || ||||||||| | || ||| || Sbjct 845 CGCGA--CCTTTTCCTCGCTCTTTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAAGA 902 Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGT 75802 || | ||| |||| | || || || || || ||||| ||||| || ||| Sbjct 903 ACGGAGACTGGACTCTCATGTGCCCCAACGAGTGTCCTGGTCTTGCCGACTGCTACGGG- 961 Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGA--AGAGG----AGGGTAGAGCCAATGCG 75856 |||||||| || |||| ||| ||||| || ||| | ||||| | ||| | Sbjct 962 GAGGAGTTCGAGACCCTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG---CAA---G 1015 Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 || | | || | | | | | ||| | || |||||| | | ||||| ||||| || | Sbjct 1016 ACCAT-CAAGGCCCAAAAGCTCTGGTATGCCATTCTCGAGGCTCAGACCGAGACCGGCAA 1074 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 || | ||||| |||||||||||| ||| ||||| ||||| ||||| |||| || Sbjct 1075 CCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTAC 1134 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 ||| ||||| || || ||||| || || | || ||| | |||||| || Sbjct 1135 TATCCGTAGCTCCAACCTCTGCACTGAGATCATCGAATACTGCGCGCCTGATGAGGTCGC 1194 Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT---ATGTCAATGAAGAGACTCGCAC 76092 ||| || || |||| || ||||||| || | | || | | | ||| | | Sbjct 1195 TGTATGTAACCTGGCCTCGCTCGCCCTGCCCACCTTCGTTGACTACAACGAGGGTGTC-- 1252 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | || | | || || || || |||| || | ||| || || ||| || | Sbjct 1253 -TACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGTAACCTCAACAGAAT 1311 Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 || ||| || || || || || || || || || ||||| ||| | || Sbjct 1312 TATCGACGTCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCC 1371 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGA 76272 |||||| | |||||||| ||||| || |||| || | |||| | ||||| Sbjct 1372 CATTGGTCTCGGTGTTCAGGGTCTTGCCGATGCCTTCTTGGCTCTCCGCATGCCCTTTGA 1431 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 || ||||| || | || || || || || || || ||||| |||| Sbjct 1432 GTCCCCCGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCACGCTGCCCT 1491 Query 76333 GGAGGCGAGT-TGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCT 76390 | || ||| | ||||| | | ||| |||| ||||| | |||||||| Sbjct 1492 --TACCATGTCGGTGCAGTTGGCCAGGGAGGAGGGTCCCTACGAGACGTACGAGGGTTCC 1549 Query 76391 CCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC--AAGCTCAACT 76448 || | || || || | || |||| || |||| |||| || || || | || || Sbjct 1550 CCTGTTTCTCAGGGCATCCTCCAGTACGACATGT-GGAATGTTAAGCCCTCGGATC-TCT 1607 Query 76449 ACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 76508 |||||||||| ||| ||||| | |||||| || | ||| | || ||| ||| | Sbjct 1608 GGGACTGGGATGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTTG 1667 Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 | || || ||||| || ||| |||| | || |||||||| || ||||| ||||| || | Sbjct 1668 TCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGC 1727 Query 76569 CATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACA 76628 | ||||| | || ||||| | | | | ||| || || |||||| | |||||| Sbjct 1728 CCTACACCTCGAATATCTATCAGCGCCGTGTCCTTGCTGGCGAGTTTCAGGTAGTCAACC 1787 Query 76629 AGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 ||| | || |||||| | || || || |||||| | | ||||||| Sbjct 1788 CTTGGCTCTTGAAGGACCTCGTCGATATGGGCCTGTGGTCCGATGCTATGAAG 1840 >seq90 Length=51520 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/225 (70%), Gaps = 9/225 (4%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT--- 65052 |||||| || || || || ||| |||||||| | ||||| | || ||| || Sbjct 5470 GCCATC---ACAGTTCCTTGCATTCGTAAGAAGGCCGACTGGGCTCTCAAGTGGATTAGC 5414 Query 65053 GACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 || ||||| |||||||||| ||||||| |||| || || || |||||||| Sbjct 5413 GATGAGAAGTC---CTCCTTCGCCCAGCGCCTGGTTGCATTCGCTGCCGTCGAGGGTATT 5357 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 |||||| || | || | |||| | ||| | |||||||| ||||||||||| || Sbjct 5356 TTCTTCAGTGGCGCCTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGT 5297 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || |||||| ||||| ||||| || || || |||||||| ||| Sbjct 5296 CTGACCTTCTCCAATGAGCTTATCTCTCGTGACGAGGGTCTGCAC 5252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596506550050400