Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 113 5e-20
seq90 98.7 1e-15
>seq1012
Length=16087
Score = 113 bits (124), Expect = 5e-20
Identities = 934/1493 (63%), Gaps = 43/1493 (3%)
Strand=Plus/Plus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| ||||||| ||||| | |||||| || || ||| |||| |||
Sbjct 368 CCTCAGCACATGATCATGCGTGTCGCTGTGGGCATCTGGGGCGATGACGTTGAACGCGTC 427
Query 75272 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329
| || || ||| || |||||| |||| | | | | |||||| | || || ||||
Sbjct 428 ATCGAAACCTACAACCTGATGTCGAGCAAGTTCTTTAC--TCACGCCTCTCCTACGCTCT 485
Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389
|||| || || || || | ||| ||||| |||||||||| ||| | |||||||
Sbjct 486 TCAACGCCGGCACCCCTCAGGCTCAGCTGTCCTCTTGCTTCCTTGTCGATATGAAGGAGG 545
Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449
|||| ||| | |||||||| | || || | | || || ||||| || ||| |
Sbjct 546 ACTCTATCGAGGGTATCTACGACACCCTCAAGACCTGCGCTATGATCTCCAAAATGGCCG 605
Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 75509
| || ||||| | | |||| | | || | ||| ||| || || |
Sbjct 606 GTGGCATTGGTCTCAATGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCTGGCACCA 665
Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569
| ||| || | ||| | |||| ||||| || || || || ||| || ||||| |
Sbjct 666 ACGGTACCTCTAACGGTGTCGTTCCCATGCTCCGTGTCTTCAATAACACTGCTCGCTACG 725
Query 75570 TAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625
| | |||| | ||| ||| || | | || | ||| | || || |||||
Sbjct 726 TCGACCAAG-GTGGCAACAAGCGCCCCGGTGCTTTTGCTATTTACCTCGAGCCTTGGCAC 784
Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685
|| || || | || ||| | || | || ||||| || | || |||| ||
Sbjct 785 GCTGACGTCTTCGACTTCTTGGATCTTCGCAAGAACCATGGCAAGGAGGAGGTCCGCGCC 844
Query 75686 AGAGATCTCTTTTCAT--CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGG 75743
| || |||||| | | || ||||| || || || ||||||||| | || ||| ||
Sbjct 845 CGCGA--CCTTTTCCTCGCTCTTTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAAGA 902
Query 75744 GTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGT 75802
|| | ||| |||| | || || || || || ||||| ||||| || |||
Sbjct 903 ACGGAGACTGGACTCTCATGTGCCCCAACGAGTGTCCTGGTCTTGCCGACTGCTACGGG- 961
Query 75803 GAGGAGTTTGAAGCCCTCTACACAAAGTATGA--AGAGG----AGGGTAGAGCCAATGCG 75856
|||||||| || |||| ||| ||||| || ||| | ||||| | ||| |
Sbjct 962 GAGGAGTTCGAGACCCTGTACGAGAAGTACGAGCAGATGGGCAAGGGTCG---CAA---G 1015
Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915
|| | | || | | | | | ||| | || |||||| | | ||||| ||||| || |
Sbjct 1016 ACCAT-CAAGGCCCAAAAGCTCTGGTATGCCATTCTCGAGGCTCAGACCGAGACCGGCAA 1074
Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975
|| | ||||| |||||||||||| ||| ||||| ||||| ||||| |||| ||
Sbjct 1075 CCCCTTCATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTAC 1134
Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035
||| ||||| || || ||||| || || | || ||| | |||||| ||
Sbjct 1135 TATCCGTAGCTCCAACCTCTGCACTGAGATCATCGAATACTGCGCGCCTGATGAGGTCGC 1194
Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT---ATGTCAATGAAGAGACTCGCAC 76092
||| || || |||| || ||||||| || | | || | | | ||| | |
Sbjct 1195 TGTATGTAACCTGGCCTCGCTCGCCCTGCCCACCTTCGTTGACTACAACGAGGGTGTC-- 1252
Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152
| || | | || || || || |||| || | ||| || || ||| || |
Sbjct 1253 -TACGACTTCCAGAAGCTCCACGAGGTCACCCAGGTCGTTGTTCGTAACCTCAACAGAAT 1311
Query 76153 CATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212
|| ||| || || || || || || || || || ||||| ||| | ||
Sbjct 1312 TATCGACGTCAACCACTACCCGGTCCAGGAGGCTCGCAACAGCAACATGCGCCACCGCCC 1371
Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGA 76272
|||||| | |||||||| ||||| || |||| || | |||| | |||||
Sbjct 1372 CATTGGTCTCGGTGTTCAGGGTCTTGCCGATGCCTTCTTGGCTCTCCGCATGCCCTTTGA 1431
Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332
|| ||||| || | || || || || || || || ||||| ||||
Sbjct 1432 GTCCCCCGAAGCTCGTGACCTCAACAAGAAGATATTCGAGACAATCTACCACGCTGCCCT 1491
Query 76333 GGAGGCGAGT-TGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCT 76390
| || ||| | ||||| | | ||| |||| ||||| | ||||||||
Sbjct 1492 --TACCATGTCGGTGCAGTTGGCCAGGGAGGAGGGTCCCTACGAGACGTACGAGGGTTCC 1549
Query 76391 CCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACC--AAGCTCAACT 76448
|| | || || || | || |||| || |||| |||| || || || | || ||
Sbjct 1550 CCTGTTTCTCAGGGCATCCTCCAGTACGACATGT-GGAATGTTAAGCCCTCGGATC-TCT 1607
Query 76449 ACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 76508
|||||||||| ||| ||||| | |||||| || | ||| | || ||| ||| |
Sbjct 1608 GGGACTGGGATGCTCTGAAGGAGCAGATCAAGCAGCACGGTGTCCGCAACTCTCTGCTTG 1667
Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568
| || || ||||| || ||| |||| | || |||||||| || ||||| ||||| || |
Sbjct 1668 TCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGCAACAATGAGTGCTTCGAGC 1727
Query 76569 CATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACA 76628
| ||||| | || ||||| | | | | ||| || || |||||| | ||||||
Sbjct 1728 CCTACACCTCGAATATCTATCAGCGCCGTGTCCTTGCTGGCGAGTTTCAGGTAGTCAACC 1787
Query 76629 AGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681
||| | || |||||| | || || || |||||| | | |||||||
Sbjct 1788 CTTGGCTCTTGAAGGACCTCGTCGATATGGGCCTGTGGTCCGATGCTATGAAG 1840
>seq90
Length=51520
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/225 (70%), Gaps = 9/225 (4%)
Strand=Plus/Minus
Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTT--- 65052
|||||| || || || || ||| |||||||| | ||||| | || ||| ||
Sbjct 5470 GCCATC---ACAGTTCCTTGCATTCGTAAGAAGGCCGACTGGGCTCTCAAGTGGATTAGC 5414
Query 65053 GACACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112
|| ||||| |||||||||| ||||||| |||| || || || ||||||||
Sbjct 5413 GATGAGAAGTC---CTCCTTCGCCCAGCGCCTGGTTGCATTCGCTGCCGTCGAGGGTATT 5357
Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172
|||||| || | || | |||| | ||| | |||||||| ||||||||||| ||
Sbjct 5356 TTCTTCAGTGGCGCCTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGT 5297
Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
|| |||||| ||||| ||||| || || || |||||||| |||
Sbjct 5296 CTGACCTTCTCCAATGAGCTTATCTCTCGTGACGAGGGTCTGCAC 5252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596506550050400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |