Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017-
01-13] 8,455 sequences; 59,914,086 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1012 134 4e-26
seq713 109 2e-18
seq747 84.2 6e-11
>seq1012
Length=16087
Score = 134 bits (148), Expect = 4e-26
Identities = 495/770 (64%), Gaps = 9/770 (1%)
Strand=Plus/Minus
Query 155592 GACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACAGCA 155650
|| ||||| |||||||| || ||| | | || ||| |||||| | |||||| |||
Sbjct 1212 GAGGCCAGGTTACATACAGCGACCTCATCAGGCG-CGCAGTATTCGATGATCTCAGTGCA 1154
Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710
||||| || || ||| || || | ||||||||||| || | ||| ||||||
Sbjct 1153 GAGGTTGGAGCTACGGATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 1094
Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770
|||||| || ||| | ||| | || ||||| |||| || || ||||| ||||||
Sbjct 1093 CTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAG 1034
Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830
| |||| || || |||| |||| | ||| || ||| ||||| ||
Sbjct 1033 CTTTTGGGCCTTGATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGGT 974
Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890
| | ||||| ||||| || || || ||||| |||| | |||||| | || |
Sbjct 973 CTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGT 914
Query 155891 CCAAATTTTATTACCGATTACACGCTC--CATAAATACATCACTCGCCCAAATAGCATAG 155948
||| | || | | ||| ||| ||| || | ||| ||||| ||| |
Sbjct 913 CCAGTCTCCGTT--CTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGG 856
Query 155949 AAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCC 156008
|||||||| | || |||||| | ||| || ||||| || || || ||||| ||
Sbjct 855 AAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCG 796
Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCA 156065
| |||| || ||||| || || ||||||||| ||| | |||| |||
Sbjct 795 AAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCA 736
Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125
|| || || || || |||||||| ||||||||||||| ||||| |||| | ||| ||
Sbjct 735 CCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTA 676
Query 156126 GAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185
|| || || ||||| || ||| | || || | | ||| | || | || ||
Sbjct 675 GAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGA 616
Query 156186 CCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCT 156245
||||| ||||| | | ||| || || |||||| ||| | || | | | |||||
Sbjct 615 CCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCC 556
Query 156246 TCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTT 156305
|| ||||| || || | ||| | || |||| || | |||| | || ||
Sbjct 555 TCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTG 496
Query 156306 CCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355
|| |||||||| || ||||| | || ||| |||| |||| | |||||
Sbjct 495 CCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACAT 446
>seq713
Length=20651
Score = 109 bits (120), Expect = 2e-18
Identities = 183/262 (70%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | ||| ||||| || |||||||| | || || ||||| |||||||| |
Sbjct 11141 CTTGACGAGACGGCGCTGGATGTAACCAGTCTCGGCAGTCTTGACAGCAGTATCAATCAA 11082
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701
||| | | |||| |||| ||||||||||| | || | || |||| | || | ||
Sbjct 11081 ACCCTCTCTACCAGCCATGGCATGGAAGAAGAATTCA-CTGGGCGTAAGACCACGAAGGT 11023
Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761
| || |||| ||||| || || ||||| || || | |||| ||||| || || || |
Sbjct 11022 ATGAATTCTCGACGAAGCCGCGAGCCTCAGGAGAGTAGTCGTCTTTGGTGAAATGCGGGA 10963
Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821
| || | | || ||||| | ||||||||||| || || || |||||||||| | |
Sbjct 10962 GAGTGCGATACTTGAAGCCGAAGGGGATACGCTTACCCTCGACAATCTGCTGTCCAACGA 10903
Query 302822 ACGAAATCATCTGCGAAATATT 302843
| | ||||||| ||||| ||
Sbjct 10902 GAGCAGTCATCTGGGAAATGTT 10881
Score = 84.2 bits (92), Expect = 6e-11
Identities = 103/140 (74%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| ||| || | |||||||||
Sbjct 11932 AGAATTTCCTTGAGACGAGGGACACCAAGCGTGACGTT---CTTAGAAGAAACACCAGCG 11876
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| |||||||| ||||| || | || |||| ||||||||||| || || |||||
Sbjct 11875 AAATGGAAAGTGTTCAGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATA 11816
Query 301933 ATACCAACCATTTCTCCTGG 301952
| || |||||||| || ||
Sbjct 11815 ACGCCCACCATTTCACCAGG 11796
>seq747
Length=20142
Score = 84.2 bits (92), Expect = 6e-11
Identities = 110/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || || ||||||||| ||||| || |||||||| || |||||||| || | |
Sbjct 6316 TGAGCAATGGTCATACGAGACGGAATGGCGTGGGGATTAATAATGATGTCAGGCGTGATG 6257
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957
|| || || |||||||||||||||| | || ||| | ||||| || ||||| ||
Sbjct 6256 CCCTCGGCGGTGAAGGGCATATCCTCCT-GTCGATAGGTAACACCAATGGTACCCTTCTG 6198
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
|||||||| || |||||| || |||||
Sbjct 6197 ACCGTGACGCGACGCGAACTTGTCGCCAAT 6168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471658158459335
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |