Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20graminicola_20[genbank_20GCA_5F001951205.1_202017- 01-13] 8,455 sequences; 59,914,086 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1012 134 4e-26 seq713 109 2e-18 seq747 84.2 6e-11 >seq1012 Length=16087 Score = 134 bits (148), Expect = 4e-26 Identities = 495/770 (64%), Gaps = 9/770 (1%) Strand=Plus/Minus Query 155592 GACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACAGCA 155650 || ||||| |||||||| || ||| | | || ||| |||||| | |||||| ||| Sbjct 1212 GAGGCCAGGTTACATACAGCGACCTCATCAGGCG-CGCAGTATTCGATGATCTCAGTGCA 1154 Query 155651 CAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATC 155710 ||||| || || ||| || || | ||||||||||| || | ||| |||||| Sbjct 1153 GAGGTTGGAGCTACGGATAGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATC 1094 Query 155711 CTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAG 155770 |||||| || ||| | ||| | || ||||| |||| || || ||||| |||||| Sbjct 1093 CTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGAGCCTCGAGAATGGCATACCAGAG 1034 Query 155771 GTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACAGCGT 155830 | |||| || || |||| |||| | ||| || ||| ||||| || Sbjct 1033 CTTTTGGGCCTTGATGGTCTTGCGACCCTTGCCCATCTGCTCGTACTTCTCGTACAGGGT 974 Query 155831 TCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGA 155890 | | ||||| ||||| || || || ||||| |||| | |||||| | || | Sbjct 973 CTCGAACTCCTCCCCGTAGCAGTCGGCAAGACCAGGACACTCGTTGGGGCACATGAGAGT 914 Query 155891 CCAAATTTTATTACCGATTACACGCTC--CATAAATACATCACTCGCCCAAATAGCATAG 155948 ||| | || | | ||| ||| ||| || | ||| ||||| ||| | Sbjct 913 CCAGTCTCCGTT--CTTCTCCACTCTCTTCATGAAGAGATCGGGGATCCAAAGAGCGAGG 856 Query 155949 AAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCC 156008 |||||||| | || |||||| | ||| || ||||| || || || ||||| || Sbjct 855 AAAAGGTCGCGGGCGCGGACCTCCTCCTTGCCATGGTTCTTGCGAAGATCCAAGAAGTCG 796 Query 156009 TCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCA 156065 | |||| || ||||| || || ||||||||| ||| | |||| ||| Sbjct 795 AAGACGTCAGCGTGCCAAGGCTCGAGGTAAATAGCAAAAGCACCGGGGCGCTTGTTGCCA 736 Query 156066 CCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTG 156125 || || || || || |||||||| ||||||||||||| ||||| |||| | ||| || Sbjct 735 CCTTGGTCGACGTAGCGAGCAGTGTTATTGAAGACACGGAGCATGGGAACGACACCGTTA 676 Query 156126 GAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGT 156185 || || || ||||| || ||| | || || | | ||| | || | || || Sbjct 675 GAGGTACCGTTGGTGCCAGCAATGTAAGAGCCGGTAGCGCGGATGCGGTGGACATTGAGA 616 Query 156186 CCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCT 156245 ||||| ||||| | | ||| || || |||||| ||| | || | | | ||||| Sbjct 615 CCAATGCCACCGGCCATTTTGGAGATCATAGCGCAGGTCTTGAGGGTGTCGTAGATACCC 556 Query 156246 TCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTT 156305 || ||||| || || | ||| | || |||| || | |||| | || || Sbjct 555 TCGATAGAGTCCTCCTTCATATCGACAAGGAAGCAAGAGGACAGCTGAGCCTGAGGGGTG 496 Query 156306 CCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || |||||||| || ||||| | || ||| |||| |||| | ||||| Sbjct 495 CCGGCGTTGAAGAGCGTAGGAGAGGCGTGAGTAAAGAACTTGCTCGACAT 446 >seq713 Length=20651 Score = 109 bits (120), Expect = 2e-18 Identities = 183/262 (70%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | ||| ||||| || |||||||| | || || ||||| |||||||| | Sbjct 11141 CTTGACGAGACGGCGCTGGATGTAACCAGTCTCGGCAGTCTTGACAGCAGTATCAATCAA 11082 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCCCCCAATAA 302701 ||| | | |||| |||| ||||||||||| | || | || |||| | || | || Sbjct 11081 ACCCTCTCTACCAGCCATGGCATGGAAGAAGAATTCA-CTGGGCGTAAGACCACGAAGGT 11023 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCA 302761 | || |||| ||||| || || ||||| || || | |||| ||||| || || || | Sbjct 11022 ATGAATTCTCGACGAAGCCGCGAGCCTCAGGAGAGTAGTCGTCTTTGGTGAAATGCGGGA 10963 Query 302762 GGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGC 302821 | || | | || ||||| | ||||||||||| || || || |||||||||| | | Sbjct 10962 GAGTGCGATACTTGAAGCCGAAGGGGATACGCTTACCCTCGACAATCTGCTGTCCAACGA 10903 Query 302822 ACGAAATCATCTGCGAAATATT 302843 | | ||||||| ||||| || Sbjct 10902 GAGCAGTCATCTGGGAAATGTT 10881 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| ||| || | ||||||||| Sbjct 11932 AGAATTTCCTTGAGACGAGGGACACCAAGCGTGACGTT---CTTAGAAGAAACACCAGCG 11876 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| ||||| || | || |||| ||||||||||| || || ||||| Sbjct 11875 AAATGGAAAGTGTTCAGCGTCATCTGCGTAGCGGGCTCACCAATGGACTGAGCTGCAATA 11816 Query 301933 ATACCAACCATTTCTCCTGG 301952 | || |||||||| || || Sbjct 11815 ACGCCCACCATTTCACCAGG 11796 >seq747 Length=20142 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||| || |||||||| || |||||||| || | | Sbjct 6316 TGAGCAATGGTCATACGAGACGGAATGGCGTGGGGATTAATAATGATGTCAGGCGTGATG 6257 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || || |||||||||||||||| | || ||| | ||||| || ||||| || Sbjct 6256 CCCTCGGCGGTGAAGGGCATATCCTCCT-GTCGATAGGTAACACCAATGGTACCCTTCTG 6198 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||| || |||||| || ||||| Sbjct 6197 ACCGTGACGCGACGCGAACTTGTCGCCAAT 6168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471658158459335